Detailed information of RARB

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Dataset summary

TF Name: RARB Species: Mus musculus
Cell-type/Tissue: liver Condition/Source: RA-treatment
JASPAR ID: MA0857.1 MA0858.1 MA1552.1 Collections: Permissive Robust
References: GEO GSE53736 GSM1299602 GTRD EXP032486

External links

Models for profile: MA0857.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA0858.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1552.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0857.1 69.5 13872 81.3 -3.56679386907351
DAMO MACS MA0858.1 79 17487 82.7 -4.13309893555215
DAMO MACS MA1552.1 67.5 16288 87 -1.66307820951546

4 datasets found for the same TF (RARB) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
RARB MCF12A (human mammary epithelial cells) Treatment: DMSO for 24 hr Permissive Homo sapiens GSE85189 ... MA0857.1 ...
RARB MCF12A (human mammary epithelial cells) Treatment: ATRA for 24 hr Permissive Homo sapiens GSE85189 ... MA0857.1 ...
RARB liver Permissive Mus musculus GSE53736 ... MA0857.1 ...
RARB brain caudate putamen Permissive Mus musculus GSE67829 ... MA0857.1 ...