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Download TFBSs and cis-regulatory modules (CRMs)

Robust collection

Species

Download cis-regulatory modules (CRMs) for all species in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for all species using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs

Download cis-regulatory modules (CRMs) for species Arabidopsis thaliana in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Arabidopsis thaliana using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the TAIR10 version of the Arabidopsis thaliana genome.

Download cis-regulatory modules (CRMs) for species Caenorhabditis elegans in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Caenorhabditis elegans using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the WBcel235 version of the Caenorhabditis elegans genome.

Download cis-regulatory modules (CRMs) for species Danio rerio in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Danio rerio using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the GRCz11 version of the Danio rerio genome.

Download cis-regulatory modules (CRMs) for species Drosophila melanogaster in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Drosophila melanogaster using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the dm6 version of the Drosophila melanogaster genome.

Download cis-regulatory modules (CRMs) for species Homo sapiens in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Homo sapiens using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the hg38 version of the Homo sapiens genome.

Download cis-regulatory modules (CRMs) for species Mus musculus in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Mus musculus using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the mm10 version of the Mus musculus genome.

Download cis-regulatory modules (CRMs) for species Rattus norvegicus in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Rattus norvegicus using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the Rnor_6.0 version of the Rattus norvegicus genome.

Download cis-regulatory modules (CRMs) for species Saccharomyces cerevisiae in the Robust collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Saccharomyces cerevisiae using prediction model DAMO in the Robust collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the R64-1-1 version of the Saccharomyces cerevisiae genome.

Permissive collection

Species

Download cis-regulatory modules (CRMs) for all species in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for all species using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs

Download cis-regulatory modules (CRMs) for species Arabidopsis thaliana in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Arabidopsis thaliana using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the TAIR10 version of the Arabidopsis thaliana genome.

Download cis-regulatory modules (CRMs) for species Caenorhabditis elegans in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Caenorhabditis elegans using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the WBcel235 version of the Caenorhabditis elegans genome.

Download cis-regulatory modules (CRMs) for species Danio rerio in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Danio rerio using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the GRCz11 version of the Danio rerio genome.

Download cis-regulatory modules (CRMs) for species Drosophila melanogaster in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Drosophila melanogaster using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the dm6 version of the Drosophila melanogaster genome.

Download cis-regulatory modules (CRMs) for species Homo sapiens in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Homo sapiens using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the hg38 version of the Homo sapiens genome.

Download cis-regulatory modules (CRMs) for species Mus musculus in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Mus musculus using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the mm10 version of the Mus musculus genome.

Download cis-regulatory modules (CRMs) for species Rattus norvegicus in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Rattus norvegicus using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the Rnor_6.0 version of the Rattus norvegicus genome.

Download cis-regulatory modules (CRMs) for species Saccharomyces cerevisiae in the Permissive collection

All CRMs (in BED format) All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Saccharomyces cerevisiae using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the R64-1-1 version of the Saccharomyces cerevisiae genome.

Download cis-regulatory modules (CRMs) for species Schizosaccharomyces pombe in the Permissive collection

All TFBSs in a compressed BED file
Prediction models

Download TFBSs for species Schizosaccharomyces pombe using prediction model DAMO in the Permissive collection

All TFBSs (in BED format) TFBSs per TF (in BED format) FASTA files for the TFBSs FASTA files for the TFBSs per TF All PWMs
Note: All the genomic coordinates are in the ASM294v2 version of the Schizosaccharomyces pombe genome.