Detailed information of RARB

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Dataset summary

TF Name: RARB Species: Mus musculus
Cell-type/Tissue: liver Condition/Source:
JASPAR ID: MA0857.1 MA0858.1 MA1552.1 Collections: Permissive
References: GEO GSE53736 GSM1299599 GTRD EXP032483

External links

Models for profile: MA0857.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA0858.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1552.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0857.1 37.5 3633 74.5 -1.11022302462516e-16
DAMO MACS MA0858.1 12 1382 75.7 NS
DAMO MACS MA1552.1 51.5 5534 85.5 -0.0158596500107602

4 datasets found for the same TF (RARB) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
RARB liver RA-treatment Permissive Robust Mus musculus GSE53736 ... MA0857.1 ...
RARB MCF12A (human mammary epithelial cells) Treatment: DMSO for 24 hr Permissive Homo sapiens GSE85189 ... MA0857.1 ...
RARB MCF12A (human mammary epithelial cells) Treatment: ATRA for 24 hr Permissive Homo sapiens GSE85189 ... MA0857.1 ...
RARB brain caudate putamen Permissive Mus musculus GSE67829 ... MA0857.1 ...