Detailed information of VDR

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Dataset summary

TF Name: VDR Species: Homo sapiens
Cell-type/Tissue: LNCaP (prostate carcinoma) Condition/Source:
JASPAR ID: MA0693.2 Collections: Permissive
References: GEO GSE64656

External links

Models for profile: MA0693.2

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Download TFBSs in BED and FASTA format

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Visualize TFBSs in UCSC

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Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0693.2 40.5 8811 93.6 -4.76851114264327e-10

40 datasets found for the same TF (VDR) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
VDR THP-1 (acute monocytic leukemia) 1α,25(OH)2D3 Permissive Robust Homo sapiens GSE27437 ... MA0074.1 ...
VDR MC3T3-E1 (preosteoblasts) ethanol vehicle Permissive Mus musculus GSE51513 ... MA0074.1 ...
VDR MC3T3-E1 (preosteoblasts) 100nM 1,25(OH)2D3 Permissive Mus musculus GSE51513 ... MA0074.1 ...
VDR MC3T3-E1 (preosteoblasts) ethanol vehicle Permissive Mus musculus GSE51513 ... MA0074.1 ...
VDR MC3T3-E1 (preosteoblasts) 100nM 1,25(OH)2D3 Permissive Mus musculus GSE51513 ... MA0074.1 ...
VDR IDG-SW3 (bone cells) 100nM 1,25(OH)2D3 for 3 hours Permissive Robust Mus musculus GSE54782 ... MA0074.1 ...
VDR duodenum and jejunum vehicle control Permissive Robust Mus musculus GSE69179 ... MA0074.1 ...
VDR duodenum and jejunum 1,25(OH)2D3 (10 ng/g bw) Permissive Robust Mus musculus GSE69179 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells 1,25(OH)2D3 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells osteogenic media day 7 Permissive Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells 1,25(OH)2D3 + osteogenic media day 7 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells osteogenic media day 15 Permissive Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells 1,25(OH)2D3 + osteogenic media day 15 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells adipose media day 7 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells 1,25(OH)2D3 + adipose media day 7 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR primary foreskin fibroblasts vehicle treated control Permissive Homo sapiens GSE76884 ... MA0074.1 ...
VDR primary foreskin fibroblasts vitamin D treated Permissive Robust Homo sapiens GSE76884 ... MA0074.1 ...
VDR THP-1 (acute monocytic leukemia) EtOH for 2h Permissive Robust Homo sapiens GSE89431 ... MA0074.1 ...
VDR THP-1 (acute monocytic leukemia) 100 nM 1,25(OH)2D3 for 2h Permissive Robust Homo sapiens GSE89431 ... MA0074.1 ...
VDR THP-1 (acute monocytic leukemia) EtOH for 24h Permissive Robust Homo sapiens GSE89431 ... MA0074.1 ...
VDR THP-1 (acute monocytic leukemia) 100 nM 1,25(OH)2D3 for 24h Permissive Robust Homo sapiens GSE89431 ... MA0074.1 ...
VDR alveolar macrophages Treatment: none Genotype: wildtype Permissive Mus musculus GSE124722 ... MA0074.1 ...
VDR alveolar macrophages Treatment: 50 nM Vitamin D3 for 24 hrs Genotype: wildtype Permissive Robust Mus musculus GSE124722 ... MA0074.1 ...
VDR RWPE1 (prostate epithelial cells) Treatment: vehicle; Permissive Robust Homo sapiens GSE116843 ... MA0074.1 ...
VDR RWPE1 (prostate epithelial cells) Treatment: vitamin D; Permissive Homo sapiens GSE116843 ... MA0693.2
VDR RWPE1 (prostate epithelial cells) Treatment: vitamin D; Permissive Robust Homo sapiens GSE116843 ... MA0074.1 ...
VDR GM10861 (female B-cells) CALCITRIOL Permissive Homo sapiens GSE22484 MA0693.2
VDR THP-1 (acute monocytic leukemia) Permissive Homo sapiens GSE27437 ... MA0074.1 ...
VDR IDG-SW3 (bone cells) Permissive Mus musculus GSE54782 ... MA0074.1 ...
VDR 3T3-L1 (embryonic fibroblasts) Permissive Mus musculus GSE56872 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells Permissive Mus musculus GSE79813 ... MA0693.2
VDR LS180 (colon cancer) 125 Permissive Robust Homo sapiens GSE31939 MA0693.2
VDR LX-2 (hepatic stellate cells) CALCIPOTRIOL Permissive Robust Homo sapiens GSE38103 MA0693.2
VDR LX-2 (hepatic stellate cells) CALCIPOTRIOL_TGFB1 Permissive Robust Homo sapiens GSE38103 MA0693.2
VDR THP-1 (acute monocytic leukemia) 1H_125D Permissive Robust Homo sapiens GSE51181 MA0693.2
VDR THP-1 (acute monocytic leukemia) 2H_125D Permissive Robust Homo sapiens GSE51181 MA0693.2
VDR THP-1 (acute monocytic leukemia) CAL Permissive Robust Homo sapiens GSE53041 MA0693.2
VDR LS180 (colon cancer) Permissive Homo sapiens GSE31939 MA0693.2
VDR LX-2 (hepatic stellate cells) Permissive Robust Homo sapiens GSE38103 MA0693.2
VDR THP-1 (acute monocytic leukemia) Permissive Homo sapiens GSE53041 MA0693.2