Detailed information of VDR

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Dataset summary

TF Name: VDR Species: Mus musculus
Cell-type/Tissue: bone marrow-derived mesenchymal stem cells Condition/Source: 1,25(OH)2D3
JASPAR ID: MA0074.1 MA0693.2 Collections: Permissive Robust
References: GEO GSE79813 GSM2104116 GSM2104117 GTRD EXP036267 PUBMED 27402842

External links

Models for profile: MA0074.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA0693.2

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0074.1 59 15566 79.3 -1.30851933849256
DAMO MACS MA0693.2 41.5 8640 94.4 -1.94951946036329e-06

40 datasets found for the same TF (VDR) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
VDR THP-1 (acute monocytic leukemia) 1α,25(OH)2D3 Permissive Robust Homo sapiens GSE27437 ... MA0074.1 ...
VDR MC3T3-E1 (preosteoblasts) ethanol vehicle Permissive Mus musculus GSE51513 ... MA0074.1 ...
VDR MC3T3-E1 (preosteoblasts) 100nM 1,25(OH)2D3 Permissive Mus musculus GSE51513 ... MA0074.1 ...
VDR MC3T3-E1 (preosteoblasts) ethanol vehicle Permissive Mus musculus GSE51513 ... MA0074.1 ...
VDR MC3T3-E1 (preosteoblasts) 100nM 1,25(OH)2D3 Permissive Mus musculus GSE51513 ... MA0074.1 ...
VDR IDG-SW3 (bone cells) 100nM 1,25(OH)2D3 for 3 hours Permissive Robust Mus musculus GSE54782 ... MA0074.1 ...
VDR duodenum and jejunum vehicle control Permissive Robust Mus musculus GSE69179 ... MA0074.1 ...
VDR duodenum and jejunum 1,25(OH)2D3 (10 ng/g bw) Permissive Robust Mus musculus GSE69179 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells osteogenic media day 7 Permissive Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells 1,25(OH)2D3 + osteogenic media day 7 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells osteogenic media day 15 Permissive Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells 1,25(OH)2D3 + osteogenic media day 15 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells adipose media day 7 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells 1,25(OH)2D3 + adipose media day 7 Permissive Robust Mus musculus GSE79813 ... MA0074.1 ...
VDR primary foreskin fibroblasts vehicle treated control Permissive Homo sapiens GSE76884 ... MA0074.1 ...
VDR primary foreskin fibroblasts vitamin D treated Permissive Robust Homo sapiens GSE76884 ... MA0074.1 ...
VDR THP-1 (acute monocytic leukemia) EtOH for 2h Permissive Robust Homo sapiens GSE89431 ... MA0074.1 ...
VDR THP-1 (acute monocytic leukemia) 100 nM 1,25(OH)2D3 for 2h Permissive Robust Homo sapiens GSE89431 ... MA0074.1 ...
VDR THP-1 (acute monocytic leukemia) EtOH for 24h Permissive Robust Homo sapiens GSE89431 ... MA0074.1 ...
VDR THP-1 (acute monocytic leukemia) 100 nM 1,25(OH)2D3 for 24h Permissive Robust Homo sapiens GSE89431 ... MA0074.1 ...
VDR alveolar macrophages Treatment: none Genotype: wildtype Permissive Mus musculus GSE124722 ... MA0074.1 ...
VDR alveolar macrophages Treatment: 50 nM Vitamin D3 for 24 hrs Genotype: wildtype Permissive Robust Mus musculus GSE124722 ... MA0074.1 ...
VDR RWPE1 (prostate epithelial cells) Treatment: vehicle; Permissive Robust Homo sapiens GSE116843 ... MA0074.1 ...
VDR RWPE1 (prostate epithelial cells) Treatment: vitamin D; Permissive Homo sapiens GSE116843 ... MA0693.2
VDR RWPE1 (prostate epithelial cells) Treatment: vitamin D; Permissive Robust Homo sapiens GSE116843 ... MA0074.1 ...
VDR GM10861 (female B-cells) CALCITRIOL Permissive Homo sapiens GSE22484 MA0693.2
VDR THP-1 (acute monocytic leukemia) Permissive Homo sapiens GSE27437 ... MA0074.1 ...
VDR IDG-SW3 (bone cells) Permissive Mus musculus GSE54782 ... MA0074.1 ...
VDR 3T3-L1 (embryonic fibroblasts) Permissive Mus musculus GSE56872 ... MA0074.1 ...
VDR bone marrow-derived mesenchymal stem cells Permissive Mus musculus GSE79813 ... MA0693.2
VDR LNCaP (prostate carcinoma) Permissive Homo sapiens GSE64656 MA0693.2
VDR LS180 (colon cancer) 125 Permissive Robust Homo sapiens GSE31939 MA0693.2
VDR LX-2 (hepatic stellate cells) CALCIPOTRIOL Permissive Robust Homo sapiens GSE38103 MA0693.2
VDR LX-2 (hepatic stellate cells) CALCIPOTRIOL_TGFB1 Permissive Robust Homo sapiens GSE38103 MA0693.2
VDR THP-1 (acute monocytic leukemia) 1H_125D Permissive Robust Homo sapiens GSE51181 MA0693.2
VDR THP-1 (acute monocytic leukemia) 2H_125D Permissive Robust Homo sapiens GSE51181 MA0693.2
VDR THP-1 (acute monocytic leukemia) CAL Permissive Robust Homo sapiens GSE53041 MA0693.2
VDR LS180 (colon cancer) Permissive Homo sapiens GSE31939 MA0693.2
VDR LX-2 (hepatic stellate cells) Permissive Robust Homo sapiens GSE38103 MA0693.2
VDR THP-1 (acute monocytic leukemia) Permissive Homo sapiens GSE53041 MA0693.2