Dataset summary
| TF Name: | REF6 | Species: | Arabidopsis thaliana |
| Cell-type/Tissue: | 14 day old seedling | Condition/Source: | Plants were grown in 1/2MS media with 22 degree in 16h light/8h dark |
| JASPAR ID: | MA1415.1 | Collections: | Permissive Robust |
| References: | GEO GSE72735 GSM1869290 GTRD EXP041541 PUBMED 27111034 | ||
External links
Statistical details
| Model | Peak caller | Model ID | Enrichment Zone | TFBSs | Score threshold | Centrality p-value (log10) |
|---|---|---|---|---|---|---|
| DAMO | MACS | MA1415.1 | 98 | 4474 | 89.6 | -60.148404954577 |
10 datasets found for the same TF (REF6) in other cell-types/tissues
| TF Name | Cell-line | Condition/Source | Collections | Species | Identifiers | JASPAR ID |
|---|---|---|---|---|---|---|
| REF6 | 12 day old seedlings | REF6p::REF6-HA ref6-1 | Permissive Robust | Arabidopsis thaliana | GSE65329 ... | MA1415.1 |
| REF6 | 14 day old seedling | brm-1; Plants were grown in 1/2MS media with 22 degree in 16h light/8h dark | Permissive Robust | Arabidopsis thaliana | GSE72735 ... | MA1415.1 |
| REF6 | 14 day old seedling | Plants were grown in 1/2MS media with 22 degree in 16h light/8h dark | Permissive Robust | Arabidopsis thaliana | GSE72735 ... | MA1415.1 |
| REF6 | flowers, 5-week-old plants | no DSG | Permissive Robust | Arabidopsis thaliana | GSE106942 ... | MA1415.1 |
| REF6 | flowers, 5-week-old plants | DSG | Permissive Robust | Arabidopsis thaliana | GSE106942 ... | MA1415.1 |
| REF6 | flowers, 5-week-old plants | DSG; triple mutant | Permissive | Arabidopsis thaliana | GSE106942 ... | MA1415.1 |
| REF6 | 10 day old seedlings | Ecotype: Columbia; Genotype: Col; | Permissive | Arabidopsis thaliana | GSE111830 ... | MA1415.1 |
| REF6 | 10 day old seedlings | Ecotype: Columbia; Genotype: drm1-2, drm2-2, cmt2-7, cmt3-11 quadruple mutant; | Permissive | Arabidopsis thaliana | GSE111830 ... | MA1415.1 |
| REF6 | 10 day old seedlings | Ecotype: Columbia; Genotype: met1-1; | Permissive | Arabidopsis thaliana | GSE111830 ... | MA1415.1 |
| REF6 | 10 day old seedlings | Ecotype: Columbia; Genotype: ref6-5; | Permissive | Arabidopsis thaliana | GSE111830 ... | MA1415.1 |