| RXRA | 
     3T3-L1 (embryonic fibroblasts)  | 
     Day 0 of differentiation  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE13511
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     3T3-L1 (embryonic fibroblasts)  | 
     Day 1 of differentiation  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE13511
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     3T3-L1 (embryonic fibroblasts)  | 
     Day 2 of differentiation  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE13511
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     3T3-L1 (embryonic fibroblasts)  | 
     Day 3 of differentiation  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE13511
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     3T3-L1 (embryonic fibroblasts)  | 
     Day 4 of differentiation  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE13511
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     3T3-L1 (embryonic fibroblasts)  | 
     Day 6 of differentiation  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE13511
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     3T3-L1-derived preadipocytes  | 
     4 hours of differentiation  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE27826
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     48hr ethanol  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE30538
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     2hr ATRA  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE30538
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     6hr ATRA  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE30538
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     24hr ATRA  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE30538
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     48hr ATRA  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE30538
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     48hr ATRA, RXRa KO  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE30538
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     NB4 (acute promyelocytic leukemia )  | 
     24 hours ATRA  | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE18886
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     UPR9 (hematopoietic stem cells)  | 
     5 hours zinc  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE18886
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     Control  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35262
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     T0901317  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35262
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     Bexarotene  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35262
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     Control  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35262
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     T0901317  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35262
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     RA-treatment  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE53736
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     MC3T3-E1 (preosteoblasts)  | 
     ethanol vehicle  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE51513
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     MC3T3-E1 (preosteoblasts)  | 
     100nM 1,25(OH)2D3  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE51513
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     MC3T3-E1 (preosteoblasts)  | 
     ethanol vehicle  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE51513
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     MC3T3-E1 (preosteoblasts)  | 
     100nM 1,25(OH)2D3  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE51513
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     IDG-SW3 (bone cells)  | 
     100nM 1,25(OH)2D3 for 3 hours  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE54782
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     all-trans retinoic acid 2h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     all-trans retinoic acid 24h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     all-trans retinoic acid 48h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     E14TG2A (embryonic stem cells)  | 
     1um Retinoic Acid (RA) for 48hrs  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE65695
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     EtOH  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     ATRA 2h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     ATRA 6h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     ATRA 24h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     ATRA 48h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     P19 (embryonic carcinoma)  | 
     EtOH  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     P19 (embryonic carcinoma)  | 
     ATRA 2h  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     P19 (embryonic carcinoma)  | 
     ATRA 6h  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     P19 (embryonic carcinoma)  | 
     ATRA 24h  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     P19 (embryonic carcinoma)  | 
     ATRA 48h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE68540
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived mesenchymal stem cells  | 
     1,25(OH)2D3  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE79813
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived mesenchymal stem cells  | 
     osteogenic media day 7  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE79813
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived mesenchymal stem cells  | 
     1,25(OH)2D3 + osteogenic media day 7  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE79813
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived mesenchymal stem cells  | 
     osteogenic media day 15  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE79813
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived mesenchymal stem cells  | 
     1,25(OH)2D3 + osteogenic media day 15  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE79813
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived mesenchymal stem cells  | 
     adipose media day 7  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE79813
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived mesenchymal stem cells  | 
     1,25(OH)2D3 + adipose media day 7  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE79813
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     monocyte-derived macrophages  | 
     untreated  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE100889
              
            
          
            
            ...
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     monocyte-derived macrophages  | 
     IL-4  | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE100889
              
            
          
            
            ...
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     embryonic stem cells  | 
     GW3965 for 24 h  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101768
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     embryonic stem cells  | 
     LG268 for 24 h  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101768
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     embryonic stem cells  | 
     RA for 24 h  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101768
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     calorie restricted diet  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE47954
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     high-fat diet  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE47954
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     calorie restricted diet  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE47954
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     high-fat diet  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE47954
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived macrophages  | 
     1h IL4  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE107456
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0074.1
        
      
        
        ...
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived macrophages  | 
     STAT6_KO  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE107456
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived macrophages  | 
     PPARG_KO  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE107456
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     JMSU-1 (Bladder carcinoma)  | 
     genotype: RXRA WT  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE107734
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     JMSU-1 (Bladder carcinoma)  | 
     genotype: RXRA S427F  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE107734
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     C2C12 (myoblasts)  | 
     50 nM bexarotene for 24 hrs  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE94558
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     MCF7 (Invasive ductal breast carcinoma)  | 
     Treatment: none;   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE41561
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     HepG2 (hepatoblastoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR000BHU
              
            
          
        
      
        
      
     | 
    
      
        
        MA0512.2
        
      
     | 
  
  
    
    | RXRA | 
     GM12878 (female B-cells lymphoblastoid cell line)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR000BJD
              
            
          
        
      
        
      
     | 
    
      
        
        MA0512.2
        
      
     | 
  
  
    
    | RXRA | 
     WA01 (H1, human embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR000BJW
              
            
          
        
      
        
      
     | 
    
      
        
        MA0512.2
        
      
     | 
  
  
    
    | RXRA | 
     SK-N-SH (neuroblastoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR000BVG
              
            
          
        
      
        
      
     | 
    
      
        
        MA0512.2
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR352QSB
              
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR098XMN
              
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     NB4 (acute promyelocytic leukemia )  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE18886
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     acute promyelocytic leukemia blasts  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE18886
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     acute promyelocytic leukemia blasts  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE18886
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     UPR9 (hematopoietic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE18886
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE32332
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE32332
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE32332
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     C17.2a (neural progenitors)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE38347
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE46762
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE53736
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE21696
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE21696
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE21696
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE21696
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE21696
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE21696
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE21696
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     liver  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE21696
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     IDG-SW3 (bone cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE54782
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     F9 (embryonal carcinoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     peritoneal macrophages  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE63696
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     E14TG2A (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE65695
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived mesenchymal stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE79813
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101768
              
            
          
            
            ...
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA1147.1
        
      
     | 
  
  
    
    | RXRA | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101768
              
            
          
            
            ...
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0074.1
        
      
        
        ...
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived macrophages  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE107456
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0494.1
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived macrophages  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE107456
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     bone marrow-derived macrophages  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE107456
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     C2C12 (myoblasts)  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE94558
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0065.2
        
      
        
        ...
        
      
        
      
        
      
        
      
        
      
        
      
        
      
        
      
     | 
  
  
    
    | RXRA | 
     | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE41561
              
            
          
        
      
     | 
    
      
        
        MA0512.2
        
      
     |