Detailed information of ARNT

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Dataset summary

TF Name: ARNT Species: Homo sapiens
Cell-type/Tissue: HUVEC-C (HUVEC, umbilical vein endothelial cells) Condition/Source: Passage: 4-6
JASPAR ID: MA0004.1 MA0006.1 MA0259.1 Collections: Permissive Robust
References: GEO GSE89836 GSM2390643 GTRD EXP049262 PUBMED 29059365

External links

Models for profile: MA0004.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA0006.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA0259.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0004.1 51.5 700 91.9 -1.9843979260971
DAMO MACS MA0006.1 51.5 712 88.4 -1.93391452570458
DAMO MACS MA0259.1 53.5 512 88.1 -0.892396597243133

11 datasets found for the same TF (ARNT) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
ARNT renal tubular cells 1 mM dimethyloxalylglycine Permissive Robust Homo sapiens GSE101063 ... MA0004.1 ...
ARNT T47D (invasive ductal carcinoma) HAEGIN2 Permissive Robust Homo sapiens GSE59935 MA0004.1
ARNT K562 (myelogenous leukemia) Permissive Homo sapiens ENCSR155KHM MA0004.1
ARNT HepG2 (hepatoblastoma) Permissive Homo sapiens ENCSR029IBC MA0004.1 ...
ARNT HEK293T (embryonic kidney) Permissive Robust Homo sapiens ENCSR760UKJ MA0004.1 ...
ARNT K562 (myelogenous leukemia) Permissive Homo sapiens ENCSR613NUC MA0004.1 ...
ARNT K562 (myelogenous leukemia) Permissive Homo sapiens ENCSR669NFS MA0004.1 ...
ARNT GM12878 (female B-cells lymphoblastoid cell line) Permissive Robust Homo sapiens ENCSR590KEQ MA0004.1 ...
ARNT MCF7 (Invasive ductal breast carcinoma) Permissive Homo sapiens GSE41820 MA0004.1
ARNT Permissive Homo sapiens GSE67237 MA0004.1
ARNT Permissive Robust Homo sapiens GSE67237 MA0004.1