Detailed information of RARG

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Dataset summary

TF Name: RARG Species: Homo sapiens
Cell-type/Tissue: RWPE1 (prostate epithelial cells) Condition/Source: Treatment: 10 uM CD437 for 2 hr Gender: male Source: non-malignant prostate cell line infected with BAC-RARG-EGFP
JASPAR ID: MA0859.1 MA0860.1 MA1553.1 Collections: Permissive Robust
References: GEO GSE117179 GSM3273036 GTRD EXP048632 PUBMED 30120411

External links

Models for profile: MA0859.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA0860.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1553.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0859.1 58.5 1102 86.2 -2.18498687459046
DAMO MACS MA0860.1 59 1140 84.1 -2.43750651505479
DAMO MACS MA1553.1 57.5 1076 87.5 -4.61700046056785

5 datasets found for the same TF (RARG) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
RARG RWPE1 (prostate epithelial cells) Treatment: 10 uM DMSO for 2 hr Gender: male Source: non-malignant prostate cell line infected with BAC-RARG-EGFP Permissive Robust Homo sapiens GSE117179 ... MA0859.1 ...
RARG RWPE1 (prostate epithelial cells) Treatment: 10 uM DMSO for 2 hr Gender: male Source: non-malignant prostate cell line infected with BAC-RARG-EGFP Permissive Homo sapiens GSE117179 ... MA0859.1 ...
RARG RWPE1 (prostate epithelial cells) Treatment: 10 uM CD437 for 2 hr Gender: male Source: non-malignant prostate cell line infected with BAC-RARG-EGFP Permissive Homo sapiens GSE117179 ... MA0859.1 ...
RARG RWPE1 (prostate epithelial cells) Treatment: 10 uM DMSO for 2 hr Gender: male Source: non-malignant prostate cell line infected with BAC-RARG-EGFP Permissive Robust Homo sapiens GSE117179 ... MA0859.1 ...
RARG RWPE1 (prostate epithelial cells) Treatment: 10 uM CD437 for 2 hr Gender: male Source: non-malignant prostate cell line infected with BAC-RARG-EGFP Permissive Robust Homo sapiens GSE117179 ... MA0859.1 ...