Detailed information of SVP

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Dataset summary

TF Name: SVP Species: Arabidopsis thaliana
Cell-type/Tissue: seedlings 2 weeks old Condition/Source: pSVP::SVP-GFP svp-41
JASPAR ID: MA0555.1 Collections: Permissive
References: GEO GSE33120 GSM820413 GSM820414 GTRD EXP041230 PUBMED 23759218

External links

Models for profile: MA0555.1

Download TFBSs (TAIR10)

Download TFBSs in BED and FASTA format

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Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0555.1 6.5 45 80.8 0.0

2 datasets found for the same TF (SVP) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
SVP inflorescence meristem and flower from stages 1 to 11 wild type Col Permissive Arabidopsis thaliana GSE33120 ... MA0555.1
SVP inflorescence meristem and flower from stages 1 to 11 pSVP::SVP-GFP svp-41 Permissive Arabidopsis thaliana GSE33120 ... MA0555.1