Detailed information of NFIC

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Dataset summary

TF Name: NFIC Species: Homo sapiens
Cell-type/Tissue: HepG2 (hepatoblastoma) Condition/Source:
JASPAR ID: MA0119.1 MA0161.2 MA1527.1 Collections: Permissive Robust
References: GEO GSE108514 GSM2902642 GTRD EXP040843

External links

Models for profile: MA0119.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA0161.2

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1527.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0119.1 132.5 6619 85.6 -32.8217682756698
DAMO MACS MA0161.2 63 5681 88 -6.85650198049566
DAMO MACS MA1527.1 132 6415 85.7 -30.0258730693245

7 datasets found for the same TF (NFIC) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
NFIC embryonic fibroblasts NFI-C KO Permissive Robust Mus musculus GSE15844 ... MA0119.1 ...
NFIC HepG2 (hepatoblastoma) Permissive Homo sapiens ENCSR000BQX MA0161.2
NFIC GM12878 (female B-cells lymphoblastoid cell line) Permissive Homo sapiens ENCSR000BRN MA0161.2
NFIC SK-N-SH (neuroblastoma) Permissive Robust Homo sapiens ENCSR000BSV MA0161.2
NFIC Ishikawa (endometrial adenocarcinoma) Permissive Robust Homo sapiens ENCSR000BUT MA0161.2
NFIC K562 (myelogenous leukemia) Permissive Robust Homo sapiens ENCSR796ITY MA0119.1 ...
NFIC embryonic fibroblasts Permissive Mus musculus GSE15844 ... MA0119.1 ...