| SOX2 | 
     ZHBTc4 (embryonic stem cells)  | 
     control  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE28453
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ZHBTc4 (embryonic stem cells)  | 
     Tet  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE28453
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ZHBTc4 (embryonic stem cells)  | 
     Tet  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE28453
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ZHBTc4 (embryonic stem cells)  | 
     Tet  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE28453
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ZHBTc4 (embryonic stem cells)  | 
     Tet  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE28453
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     2TS22C (embryonic stem cells)  | 
     Tet  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE28453
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     neuralized embryoid body  | 
     all trans retinoic acid (RA) and SAG for 3 days before harvested  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE42132
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     none  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE59378
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     2TS22C (embryonic stem cells)  | 
     O-GlcNAc-deficient SOX2, long fragments  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE69592
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     2TS22C (embryonic stem cells)  | 
     O-GlcNAc-deficient SOX2, short fragments  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE69592
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     2TS22C (embryonic stem cells)  | 
     long fragments  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE69592
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     2TS22C (embryonic stem cells)  | 
     short fragments  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE69592
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     OKSM reprogrammed embryonic fibroblasts  | 
     Chaf1a KO  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE72744
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     stomach  | 
     SOX2 KO  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE83965
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     PARP-1 KO  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74112
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     epiblast stem cells  | 
     feeder free  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74636
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ZHBTc4 (embryonic stem cells)  | 
     untreated control  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE87820
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ZHBTc4 (embryonic stem cells)  | 
     doxycycline-treated  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE87820
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Brg1fl/fl (embryonic stem cells)  | 
     untreated control  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE87820
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Brg1fl/fl (embryonic stem cells)  | 
     tamoxifen-treated  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE87820
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     E3.5 embryonic stem cells  | 
     asynchronous cell cycle  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE92846
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     KH2 (embryonic stem cells)  | 
     Overexpress Sox2-V5 tagged  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43275
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     KH2 (embryonic stem cells)  | 
     Overexpress Sox2KE-V5 tagged; Sox2KE variant  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43275
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2 and Klf4 addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2-VP16 (strong activator) and Klf4 addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Genotype: wildtype Passage: 8   | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2, Klf4 and Myc addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2-VP16 (strong activator), Klf4 and Myc addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     iPS (derived pancreatic precursor cells)  | 
     Treatment: iPS protocol 3s2 Passage: 20  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, day3 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, day6 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, cKIT+, day9 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, sKIT+, day 12 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: GFP1+, MEF derived induced pluripotent stem cells  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: Thy1+, day3 cells refractory to MEF reprogramming.  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: Thy1+, day6 cells refractory to MEF reprogramming.  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: Thy1+, day3 cells refractory to MEF reprogramming.  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, day3 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: Thy1+, day6 cells refractory to MEF reprogramming.  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, day6 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, cKIT+, day9 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, sKIT+, day 12 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: GFP1+, MEF derived induced pluripotent stem cells  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     lung epithelial cells  | 
     Strain: C57BL/6 Age: 8 week Genotype: wildtype  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE108952
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     lung epithelial cells  | 
     Strain: C57BL/6 Age: 8 week Genotype: ectopic Sox2 expression and Nkx2-1 deletion  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE108952
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     lung epithelial cells  | 
     Strain: C57BL/6 Age: 8 week Genotype: ectopic Sox2 expression  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE108952
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ES-E14 (E14, embryonic stem cells)  | 
     Uhrf1 KO  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE113913
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Cell line generated from Lenti-Sox2-Cre infected KrasLSL-G12D/+;Trp53fl/fl (KPS) tumors  | 
     Tissue: KPS1 cell line generated from Lenti-Sox2-Cre infected KrasLSL-G12D/+;Trp53fl/fl (KPS) tumors  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118244
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     Cell line generated from Lenti-Sox2-Cre infected KrasLSL-G12D/+;Trp53fl/fl (KPS) tumors  | 
     Tissue: KPS2 cell line generated from Lenti-Sox2-Cre infected KrasLSL-G12D/+;Trp53fl/fl (KPS) tumors  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118244
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Cell line generated from Lenti-Sox2-Cre infected KrasLSL-G12D/+;Trp53fl/fl (KPS) tumors  | 
     Tissue: KPS3 cell line generated from Lenti-Sox2-Cre infected KrasLSL-G12D/+;Trp53fl/fl (KPS) tumors  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118244
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
     | 
  
  
    
    | SOX2 | 
     Lung squamous cell carcinoma from Lkb1fl/fl;Ptenfl/fl (LP) mouse model; infected with Ad5-CMV-Cre virus; harvested approximately 10 months post-infection.  | 
     Tissue: Lung squamous cell carcinoma from Lkb1fl/fl;Ptenfl/fl (LP) mouse model  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118244
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     cortex  | 
     Sex: male Age: 1-2 months Strain: C57BL/6 Treatment: transduced with SOX2  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE85213
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts  | 
     Cell type: MEF expressing OKSM for 4 days Treatment: shRNA Genotype: shCtrl Passage: 1  Source: mouse embryonic fibroblast cells E13.5  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE99009
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts  | 
     Cell type: MEF expressing OKSM for 4 days Treatment: shRNA Genotype: shCtrl Passage: 1  Source: mouse embryonic fibroblast cells E13.5  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE99009
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts  | 
     Cell type: MEF expressing OKSM for 4 days Treatment: shRNA Genotype: shUbc9 Passage: 1  Source: mouse embryonic fibroblast cells E13.5  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE99009
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts  | 
     Cell type: MEF expressing OKSM for 4 days Treatment: shRNA Genotype: shUbc9 Passage: 1  Source: mouse embryonic fibroblast cells E13.5  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE99009
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: FA Cell cecle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: M  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: FA Cellcycle: M  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: M  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     differentiated embryonic stem cells  | 
     Strain: C57BL/6N;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE93524
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     squamous cell carcinoma  | 
     Conditions: low calcium (50uM) conditions for 24 hrs; Strain: C57BL/6; Tissue: skin;  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE104142
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     squamous cell carcinoma  | 
     Conditions: low calcium (50uM) conditions for 24 hrs; Strain: C57BL/6; Tissue: skin;  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE104142
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     E14TG2A (embryonic stem cells)  | 
     Treatment: no Dox; Cell type: 44iN; Characteristic: lif +;  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118898
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     E14TG2A (embryonic stem cells)  | 
     Treatment: 1 ug/mL of Doxycycline; Cell type: 44iN; Characteristic: lif +;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118898
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     NIH 3T3 (embryonic fibroblasts)  | 
     Genotype: Overexpression of SOX2; Treatment: treated overnight with 500 ng/ml of Doxycycline one day after seeding;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE119782
              
            
          
            
            ...
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     hippocamus-derived neural progenitor cells  | 
     Strain: mixed C57BL/6 x DBA; Source: hippocamus;  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90559
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     hippocamus-derived neural progenitor cells  | 
     Strain: mixed C57BL/6 x DBA; Source: hippocamus;  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90559
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     BJ (fibroblasts)  | 
     INDUCED  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE36570
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     | 
     stem  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE67282
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE11724
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     LN229 (glioblastoma)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE23795
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE11431
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE44286
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35496
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35496
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     neural progenitors  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35496
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35496
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     neural progenitors  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35496
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cell-derived neural progenitors  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE35496
              
            
          
            
            ...
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     STHdhQ7 (striatal cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43429
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE46130
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ZHBTc4-TS (trophoblast stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE51511
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     EGFP-TS3.5 TS (trophoblast stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE51511
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     D3 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE54103
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     multipotent otic progenitors  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE62513
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     neural stem cells  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE69859
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     OKSM reprogrammed embryonic fibroblasts  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE72744
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE72744
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74599
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     stomach  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE83965
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74112
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     epiblast stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74636
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     WA09 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE76082
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     H9-derived neuroectoderm cells  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE76082
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ES-E14 (E14, embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE89599
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ES-E14 (E14, embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE89599
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ES-E14 (E14, embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE89599
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ES-E14 (E14, embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE89599
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts expressing OSKM for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts expressing Sox2 from pMX vector for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts expressing Sox2 from inducible system for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts expressing Oct4,Sox2 from pMX vector for 48h  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic fibroblasts expressing Oct4,Sox2,Klf4 from pMX vector for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     pre-induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     E3.5 embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE92846
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryos, late blastula  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Danio rerio | 
    
      
        
          
            
              
              GSE39780
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     embryonic stem cell-derived neural progenitors  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE33059
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     ES-E14 (E14, embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE113913
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | SOX2 | 
     hESC-1 (Embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE18292
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     H9  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE46837
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     KYSE70 (esophageal squamous carcinoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE46837
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     TT (hereditary thyroid gland medullary carcinoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE46837
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     hiPSC  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE56567
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     hESC-1 (Embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE69479
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     hNSC (neural stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE69479
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     | 
     SHSOX2  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE49404
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     hiPSC  | 
     INHI  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE67282
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     hiPSC  | 
     KDP53_INHI  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE67282
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     | 
  
  
    
    | SOX2 | 
     | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE49404
              
            
          
        
      
     | 
    
      
        
        MA0143.4
        
      
     |