Detailed information of HNF4A

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Dataset summary

TF Name: HNF4A Species: Mus musculus
Cell-type/Tissue: liver Condition/Source: HNF4A floxed
JASPAR ID: MA0114.4 MA1494.1 Collections: Permissive Robust
References: GEO GSE90533 GSM2406339 GSM2406340 GTRD EXP038113

External links

Models for profile: MA0114.4

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

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Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1494.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0114.4 85 33688 80.5 -23.9500244423437
DAMO MACS MA1494.1 91 28536 80.6 -26.8814765910013

55 datasets found for the same TF (HNF4A) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
HNF4A HepG2 (hepatoblastoma) low-glucose DMEM with 0.5% BSA supplemented with 1uM forskolin and 1mM pyruvate for 6h. (Snyder) Permissive Robust Homo sapiens ENCSR000EEU MA0114.4
HNF4A HepG2 (hepatoblastoma) none Permissive Robust Homo sapiens GSE25021 ... MA0114.4 ...
HNF4A kidney castrated+testosterone Permissive Robust Mus musculus GSE47192 ... MA0114.4 ...
HNF4A caput epididymis intact Permissive Mus musculus GSE47192 ... MA0114.4 ...
HNF4A kidney castrated+vehicle Permissive Robust Mus musculus GSE47192 ... MA0114.4 ...
HNF4A kidney E20 Permissive Robust Rattus norvegicus GSE50815 ... MA0114.4 ...
HNF4A kidney P13 Permissive Robust Rattus norvegicus GSE50815 ... MA0114.4 ...
HNF4A kidney Adult Permissive Robust Rattus norvegicus GSE50815 ... MA1494.1
HNF4A colonic epithelial cells water only Permissive Robust Mus musculus GSE52426 ... MA0114.4 ...
HNF4A colonic epithelial cells 3% DSS Permissive Robust Mus musculus GSE52426 ... MA0114.4 ...
HNF4A DLK1+ hepatoblasts none Permissive Robust Mus musculus GSE54520 ... MA0114.4 ...
HNF4A H4-II-E (hepatocellular carcinoma) siRNA - Scrambled Permissive Robust Rattus norvegicus GSE53862 ... MA0114.4 ...
HNF4A H4-II-E (hepatocellular carcinoma) siRNA - Tcf7l2 Permissive Robust Rattus norvegicus GSE53862 ... MA0114.4 ...
HNF4A liver Taf4-/- Permissive Robust Mus musculus GSE57807 ... MA0114.4 ...
HNF4A liver FoxA1 and FoxA2 KO Permissive Robust Mus musculus GSE77670 ... MA0114.4 ...
HNF4A liver sham surgery, 14 days after surgery Permissive Robust Rattus norvegicus GSE87730 ... MA0114.4 ...
HNF4A liver ligated bile duct, 14 days after surgery Permissive Rattus norvegicus GSE87730 ... MA0114.4
HNF4A liver sham surgery, 5 days after surgery Permissive Rattus norvegicus GSE87730 ... MA0114.4 ...
HNF4A liver ligated bile duct, 5 days after surgery Permissive Rattus norvegicus GSE87730 ... MA0114.4 ...
HNF4A liver sham surgery, 1 day after surgery Permissive Rattus norvegicus GSE87730 ... MA0114.4 ...
HNF4A liver ligated bile duct, 1 day after surgery Permissive Rattus norvegicus GSE87730 ... MA0114.4 ...
HNF4A jejunal crypt intestinal epithelial cells GF Permissive Robust Mus musculus GSE90461 ... MA0114.4 ...
HNF4A jejunal crypt intestinal epithelial cells CV Permissive Robust Mus musculus GSE90461 ... MA0114.4 ...
HNF4A liver HNF4A floxed, liver KO Permissive Robust Mus musculus GSE90533 ... MA0114.4 ...
HNF4A liver Strain: liver Age: 8 weeks old Sample: ZT4 Permissive Robust Mus musculus GSE118007 ... MA0114.4 ...
HNF4A liver Strain: liver Age: 8 weeks old Sample: ZT6 Permissive Robust Mus musculus GSE118007 ... MA0114.4 ...
HNF4A colon epithelium Conditions: high fat diet Sex: male Strain: C57BL/6 Permissive Robust Mus musculus GSE99670 ... MA0114.4 ...
HNF4A colon epithelium Conditions: high fat diet Sex: male Strain: C57BL/6 Permissive Robust Mus musculus GSE99670 ... MA0114.4 ...
HNF4A colon epithelium Conditions: low fat diet Sex: male Strain: C57BL/6 Permissive Robust Mus musculus GSE99670 ... MA0114.4 ...
HNF4A colon epithelium Conditions: low fat diet Sex: male Strain: C57BL/6 Permissive Robust Mus musculus GSE99670 ... MA0114.4 ...
HNF4A hiPSC Developmental stage: day 8; Permissive Robust Homo sapiens GSE104613 ... MA0114.4 ...
HNF4A HepG2 (hepatoblastoma) Permissive Robust Homo sapiens ENCSR000BLF MA0114.4
HNF4A HepG2 (hepatoblastoma) Permissive Robust Homo sapiens GSE18989 ... MA0114.4 ...
HNF4A HepG2 (hepatoblastoma) Permissive Robust Homo sapiens GSE18989 ... MA0114.4 ...
HNF4A villus Permissive Robust Mus musculus GSE34566 ... MA0114.4 ...
HNF4A villus Permissive Robust Mus musculus GSE34566 ... MA0114.4 ...
HNF4A liver Permissive Robust Mus musculus GSE57807 ... MA0114.4 ...
HNF4A liver Permissive Robust Mus musculus GSE57807 ... MA0114.4 ...
HNF4A liver Permissive Robust Mus musculus GSE77670 ... MA0114.4 ...
HNF4A HUES64 (embryonic stem cells) Permissive Homo sapiens GSE61475 ... MA0114.4 ...
HNF4A HUES64 (embryonic stem cells) Permissive Robust Homo sapiens GSE61475 ... MA0114.4 ...
HNF4A HUES64 (embryonic stem cells) Permissive Robust Homo sapiens GSE61475 ... MA0114.4 ...
HNF4A liver Permissive Robust Homo sapiens ENCSR445QRF MA0114.4 ...
HNF4A liver Permissive Robust Homo sapiens ENCSR601OGE MA0114.4 ...
HNF4A HepG2 (hepatoblastoma) Permissive Robust Homo sapiens ERP000209 MA0114.4
HNF4A liver Permissive Robust Homo sapiens ERP002306 MA0114.4
HNF4A Caco-2 (colon adenocarcinoma) DIFF Permissive Robust Homo sapiens GSE23436 MA0114.4
HNF4A Caco-2 (colon adenocarcinoma) PROLIF Permissive Robust Homo sapiens GSE23436 MA0114.4
HNF4A GP5d (colon adenocarcinoma) SIRAD21 Permissive Robust Homo sapiens GSE51234 MA0114.4
HNF4A LoVo (colorectal adenocarcinoma) PHASEM Permissive Robust Homo sapiens GSE51290 MA0114.4
HNF4A LoVo (colorectal adenocarcinoma) PHASES Permissive Robust Homo sapiens GSE51290 MA0114.4
HNF4A HCT-116 (colon carcinoma) TCF4 Permissive Robust Homo sapiens GSE62890 MA0114.4
HNF4A HCT-116 (colon carcinoma) TCF4_DOX Permissive Robust Homo sapiens GSE62890 MA0114.4
HNF4A GP5d (colon adenocarcinoma) Permissive Robust Homo sapiens GSE51234 MA0114.4
HNF4A HCT-116 (colon carcinoma) Permissive Robust Homo sapiens GSE62890 MA0114.4