Detailed information of RARA

Dataset summary

TF Name: RARA Species: Mus musculus
Cell-type/Tissue: F9 (embryonal carcinoma) Condition/Source: all-trans retinoic acid 24h
JASPAR ID: MA0159.1 MA0729.1 MA0730.1 MA1149.1 Collections: Permissive Robust
References: GEO GSE56893 GSM1370742 GTRD EXP033560 PUBMED 25897113

External links

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0159.1 98 5970 84.2 -2.2585603184086
DAMO MACS MA0729.1 104.5 5654 87.8 -0.635368928782919
DAMO MACS MA0730.1 106 11823 83.5 -23.1817580344468
DAMO MACS MA1149.1 97.5 7156 83 -8.63203849039811

25 datasets found for the same TF (RARA) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
RARA NB4 (acute promyelocytic leukemia ) 24 hours ATRA Permissive Homo sapiens GSE18886 ... MA0159.1 ...
RARA UPR9 (hematopoietic stem cells) 5 hours zinc Permissive Robust Homo sapiens GSE18886 ... MA0159.1 ...
RARA HBG3 (embryonic stem cells) retinoic acid Permissive Robust Mus musculus GSE19409 ... MA0159.1 ...
RARA embryonic stem cells all trans retinoic acid Permissive Robust Mus musculus GSE35599 ... MA0159.1 ...
RARA embryonic stem cells all trans retinoic acid Permissive Mus musculus GSE35599 ... MA0159.1 ...
RARA CMTi-1 (embryonic stem cells) shH2A.Z Permissive Robust Mus musculus GSE34483 ... MA0159.1 ...
RARA liver RA-treatment Permissive Mus musculus GSE53736 ... MA0159.1 ...
RARA F9 (embryonal carcinoma) all-trans retinoic acid 2h Permissive Robust Mus musculus GSE56893 ... MA0159.1 ...
RARA F9 (embryonal carcinoma) all-trans retinoic acid 48h Permissive Robust Mus musculus GSE56893 ... MA0159.1 ...
RARA U937 (adult acute monocytic leukemia) Treatment: 3 mg/mL vehicle for 3 days Permissive Homo sapiens GSE98006 ... MA0159.1 ...
RARA U937 (adult acute monocytic leukemia) Treatment: 3 mg/mL ATRA for 3 days Permissive Robust Homo sapiens GSE98006 ... MA0159.1 ...
RARA E11.5 proximal forelimb buds Genotype: wildtype Strain: CD1 Permissive Robust Mus musculus GSE105206 ... MA0159.1 ...
RARA E11.5 distal forelimb buds Genotype: wildtype Strain: CD1 Permissive Robust Mus musculus GSE105206 ... MA0159.1 ...
RARA NB4 (acute promyelocytic leukemia ) Permissive Homo sapiens GSE18886 ... MA0159.1 ...
RARA UPR9 (hematopoietic stem cells) Permissive Homo sapiens GSE18886 ... MA0159.1 ...
RARA HBG3 (embryonic stem cells) Permissive Robust Mus musculus GSE19409 ... MA0159.1 ...
RARA CMTi-1 (embryonic stem cells) Permissive Robust Mus musculus GSE34483 ... MA0159.1 ...
RARA liver Permissive Mus musculus GSE46762 ... MA0159.1 ...
RARA liver Permissive Mus musculus GSE53736 ... MA0159.1 ...
RARA F9 (embryonal carcinoma) Permissive Robust Mus musculus GSE56893 ... MA0159.1 ...
RARA Th1-cells Permissive Mus musculus GSE60353 ... MA0159.1 ...
RARA HepG2 (hepatoblastoma) Permissive Robust Homo sapiens ENCSR500WXT MA0159.1 ...
RARA TSU-1621-MT (adult acute myeloid leukemia) Permissive Homo sapiens GSE60477 MA0159.1 ...
RARA SK-N-SH (neuroblastoma) Permissive Homo sapiens GSE69119 MA0159.1 ...
RARA SK-N-SH (neuroblastoma) Permissive Homo sapiens GSE69119 MA0159.1 ...