| POU5F1 | 
     bipolar neuron  | 
     0.5 μg/mL doxycycline hyclate (CHEBI:34730) for 4 day  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR362VCG
              
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     CMTi-1 (embryonic stem cells)  | 
     shH2A.Z  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE34483
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     jmjd2b KD  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43229
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     jmjd2c KD  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43229
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     epiblast-like cells  | 
     Activin A  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56098
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     KH2 (embryonic stem cells)  | 
     Standard Serum  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56312
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     KH2 (embryonic stem cells)  | 
     2i for 24 hours  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56312
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     Lif 2i  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE58407
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     differentiated embryonic stem cells  | 
     -Lif -2i day 1  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE58407
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     epiblast-like cells  | 
     -Lif -2i day 3  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE58407
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     none  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE59378
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ES-E14 (E14, embryonic stem cells)  | 
     shCtrl  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE64008
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ES-E14 (E14, embryonic stem cells)  | 
     shNup153-2  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE64008
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cell-derived mesoderm  | 
     none  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE69099
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     antisense oligonucleotide  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE69140
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     7SK antisense oligonucleotide  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE69140
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ES-E14 (E14, embryonic stem cells)  | 
     G1  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE78073
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ES-E14 (E14, embryonic stem cells)  | 
     G2/M  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE78073
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     PARP-1 KO  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74112
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     epiblast stem cells  | 
     feeder free  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74636
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryoid body  | 
     +12hrDox(iFlag.Ngn2)  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE80321
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryoid body  | 
     (iNgn2.Isl1.Lhx3.V5)  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE80321
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryoid body  | 
     +12hrDox(iNgn2.Isl1.Lhx3.V5)  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE80321
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ZHBTc4 (embryonic stem cells)  | 
     untreated control  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE87820
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ZHBTc4 (embryonic stem cells)  | 
     doxycycline-treated  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE87820
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Brg1fl/fl (embryonic stem cells)  | 
     untreated control  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE87820
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Brg1fl/fl (embryonic stem cells)  | 
     tamoxifen-treated  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE87820
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     E3.5 embryonic stem cells  | 
     asynchronous cell cycle  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE92846
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     F9 (embryonal carcinoma)  | 
     Treated with retinoic acid; Differentiated into primitive endoderm-like cells  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43275
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     KH2 (embryonic stem cells)  | 
     Overexpress Sox17-V5 tagged  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43275
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     KH2 (embryonic stem cells)  | 
     Overexpress Sox2-V5 tagged  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43275
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     KH2 (embryonic stem cells)  | 
     Overexpress Sox2KE-V5 tagged; Sox2KE  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43275
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     KH2 (embryonic stem cells)  | 
     Overexpress Sox17EK-V5 tagged; Sox17EK  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43275
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     WA09 (embryonic stem cells)  | 
     Treatment: under normal conditions  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE105028
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     WA09 (embryonic stem cells)  | 
     Treatment: under heat shock conditions  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE105028
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2 and Klf4 addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2-VP16 (strong activator) and Klf4 addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2, Klf4 and Myc addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2, Klf4 and Myc addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MRC-5 (fetal lung fibroblasts)  | 
     Treatment: Oct4, Sox2-VP16 (strong activator), Klf4 and Myc addition for 5 days Passage: 8   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     iPSC (induced pluripotent stem cells)  | 
     Treatment: iPS protocol 3s2 Passage: 20  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE81899
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     BJ (fibroblasts)  | 
     Genotype: Clonal FOXA2 doxycycline inducible cells  | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE92491
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, day3 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, day6 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, cKIT+, day9 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, sKIT+, day 12 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: GFP1+, MEF derived induced pluripotent stem cells  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: Thy1+, day3 cells refractory to MEF reprogramming.  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: Thy1+, day6 cells refractory to MEF reprogramming.  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: Thy1+, day3 cells refractory to MEF reprogramming.  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, day3 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: Thy1+, day6 cells refractory to MEF reprogramming.  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, day6 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, cKIT+, day9 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: SSEA1+, sKIT+, day 12 MEF reprogramming intermediates  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: het-het-het Strain: rtTA3-OKSM-Oct4GFP Treatment: GFP1+, MEF derived induced pluripotent stem cells  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE101905
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Secondary MEF cells  | 
     Treatment: DOX induction, day1 Genotype: Mbd3f/- cell line   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Secondary MEF cells  | 
     Treatment: DOX induction, day 2 Genotype: Mbd3f/- cell line  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Secondary MEF cells  | 
     Treatment: DOX induction, N2B27 2i\\LIF medium, day3 Genotype: Mbd3f/- cell line  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Secondary MEF cells  | 
     Treatment: DOX induction, N2B27 2i\\LIF medium, day4 Genotype: Mbd3f/- cell line  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Secondary MEF cells  | 
     Treatment: DOX induction, N2B27 2i\\LIF medium, day5 Genotype: Mbd3f/- cell line  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Secondary MEF cells  | 
     Treatment: DOX induction, N2B27 2i\\LIF medium, day6 Genotype: Mbd3f/- cell line  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Secondary MEF cells  | 
     Treatment: DOX induction, N2B27 2i\\LIF medium, day7 Genotype: Mbd3f/- cell line  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Secondary MEF cells  | 
     Treatment: DOX induction, N2B27 2i\\LIF medium, day8 Genotype: Mbd3f/- cell line  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     V6.5 (embryonic stem cells)  | 
     Genotype: Mbd3f/- cell line  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     MEF-1 (mouse embryonic fibroblasts)  | 
     Genotype: MBD3flox/- Treatment: DOX inducible OSKM reprogramming Title: reanalyzed for GSE49766   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE102517
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ES-E14 (E14, embryonic stem cells)  | 
     Uhrf1 KO  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE113913
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     Sorted fraction: Esrrb-High  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118905
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     Sorted fraction: Esrrb-Medium  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118905
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     Sorted fraction: Esrrb-Negative  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118905
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     V6.5 (embryonic stem cells)  | 
     Treatment: DMSO for 24 hrs  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE120459
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     V6.5 (embryonic stem cells)  | 
     Treament: dTAG-47, 100 nM for 24 hrs  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE120459
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts  | 
     Treatment: + 1 ug/ml doxycycline Genotype: Smad3CA expression Source: day 3 of reprogramming   | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE85177
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts  | 
     Cell type: MEF expressing OKSM for 4 days Treatment: shRNA Genotype: shCtrl Passage: 1  Source: mouse embryonic fibroblast cells E13.5  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE99009
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts  | 
     Cell type: MEF expressing OKSM for 4 days Treatment: shRNA Genotype: shCtrl Passage: 1  Source: mouse embryonic fibroblast cells E13.5  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE99009
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts  | 
     Cell type: MEF expressing OKSM for 4 days Treatment: shRNA Genotype: shUbc9 Passage: 1  Source: mouse embryonic fibroblast cells E13.5  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE99009
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts  | 
     Cell type: MEF expressing OKSM for 4 days Treatment: shRNA Genotype: shUbc9 Passage: 1  Source: mouse embryonic fibroblast cells E13.5  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE99009
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: FA Cell cecle: l  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: M  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: DSGFA Cellcycle: M  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     Tg2a  | 
     Cell type: ebryonic stem cells Treatment: FA Cellcycle: M  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE122589
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     Treatment: 0 hr treatment; Strain: C57BL/6;  | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE65192
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     HUES8 (Embryonic stem cell, blastocyst stage)  | 
     Genotype: SOX17-GFP knockout;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE109524
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     HUES8 (Embryonic stem cell, blastocyst stage)  | 
     Genotype: SOX17-GFP knockout;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE109524
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     E14TG2A (embryonic stem cells)  | 
     Treatment: no Dox; Cell type: 44iN; Characteristic: lif +;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118898
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     E14TG2A (embryonic stem cells)  | 
     Treatment: 1 ug/mL of Doxycycline; Cell type: 44iN; Characteristic: lif +;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE118898
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     Passage: 25 days; Genotype: Overexpression OCT4; Treatment: pMSCV mediated virus;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE120399
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     Passage: 25 days; Genotype: Overexpression OCT4, caMKL1 blocked; Treatment: pMSCV mediated virus;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE120399
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     Passage: p20-30; Genotype: wildtype; Treatment: none;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE120399
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     Passage: p20-30; Genotype: caMKL1 blocked; Treatment: none;  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE120399
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     BJ (fibroblasts)  | 
     INDUCED  | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE36570
              
            
          
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     WA01 (H1, human embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR000BMU
              
            
          
        
      
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     GM23338  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR264RJX
              
            
          
        
      
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     K562 (myelogenous leukemia)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ENCSR364SNE
              
            
          
        
      
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     E14TG2A (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              ENCSR392DGA
              
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE11724
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     WA09 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE21916
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE11431
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     CCE (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE22934
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE44286
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     CMTi-1 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE34483
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43229
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE46130
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     J1 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE49137
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     J1 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE49137
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     epiblast-like cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56098
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56098
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE56098
              
            
          
            
            ...
            
          
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ES-E14 (E14, embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE65093
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     E13.5 embryonic fibroblasts  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     E13.5 embryonic fibroblasts  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     induced embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE67520
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     KH2 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE71675
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     HUES64 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE61475
              
            
          
            
            ...
            
          
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74112
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     epiblast stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE74636
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE85062
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts expressing OSKM for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts expressing Oct4 from pMX vector for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts expressing Oct4 from inducible system for 48h  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts expressing Oct4,Klf4 from pMX vector for 48h  | 
     | 
    
      
      
      Permissive
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts expressing Oct4,Sox2 from pMX vector for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts expressing Oct4,Sox2,Klf4 from pMX vector for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts expressing OSKM and Flag-Fra1 for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryonic fibroblasts expressing OSKM and Esrrb for 48h  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     pre-induced pluripotent stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE90893
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     E3.5 embryonic stem cells  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE92846
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     WA09 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE99627
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     WA09 (embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE99627
              
            
          
            
            ...
            
          
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     F9 (embryonal carcinoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE43275
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryos, late blastula  | 
     | 
    
      
      
      Permissive
      
     | 
    Danio rerio | 
    
      
        
          
            
              
              GSE39780
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     embryos, 512 cell stage  | 
     | 
    
      
      
      Permissive
      
     | 
    Danio rerio | 
    
      
        
          
            
              
              GSE39780
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     WA01 (H1, human embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE100639
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     1% H1 ESCs with 99% fibroblsat  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE100639
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     2nd trimester human fetal testis  | 
     | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE100639
              
            
          
            
            ...
            
          
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     ES-E14 (E14, embryonic stem cells)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Mus musculus | 
    
      
        
          
            
              
              GSE113913
              
            
          
            
            ...
            
          
        
      
        
      
        
      
     | 
    
      
        
        MA0142.1
        
      
        
        ...
        
      
     | 
  
  
    
    | POU5F1 | 
     hiPSC  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE56567
              
            
          
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     NCCIT (testicular embryonic carcinoma)  | 
     SNF5  | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE36134
              
            
          
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     hESC-1 (Embryonic stem cells)  | 
     NAIVE  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE69646
              
            
          
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     hESC-1 (Embryonic stem cells)  | 
     PRIMED  | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE69646
              
            
          
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     NCCIT (testicular embryonic carcinoma)  | 
     | 
    
      
      
      Permissive
      
      Robust
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              GSE36134
              
            
          
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     WA01 (H1, human embryonic stem cells)  | 
     3IL  | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ERP004238
              
            
          
        
      
     | 
    
      
        
        MA1115.1
        
      
     | 
  
  
    
    | POU5F1 | 
     WA01 (H1, human embryonic stem cells)  | 
     3IL  | 
    
      
      
      Permissive
      
     | 
    Homo sapiens | 
    
      
        
          
            
              
              ERP004238
              
            
          
        
      
     | 
    
      
        
        MA1115.1
        
      
     |