Detailed information of PTF1A

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Dataset summary

TF Name: PTF1A Species: Mus musculus
Cell-type/Tissue: neural tube Condition/Source:
JASPAR ID: MA1618.1 MA1619.1 MA1620.1 Collections: Permissive
References: GEO GSE55840 GSM1347011 GTRD EXP032951

External links

Models for profile: MA1618.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1619.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1620.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA1618.1 1 298 89.3 0.0
DAMO MACS MA1619.1 2.5 479 89.2 NS
DAMO MACS MA1620.1 3.5 703 91 NS

9 datasets found for the same TF (PTF1A) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
PTF1A pancreas Genotype: Ela1-myc mice Age: 8 weeks-old Permissive Robust Mus musculus GSE77409 ... MA1618.1 ...
PTF1A ES cell-derived embryoid bodies (EBs) Treatment: 3 ug/ml Dox induction for 12 hours; Strain: Ainv15(iAscl1[bHLH:Ngn2].HA); Permissive Robust Mus musculus GSE114172 ... MA1618.1 ...
PTF1A telencephalon Permissive Mus musculus GSE47459 ... MA1618.1 ...
PTF1A neural tube Permissive Robust Mus musculus GSE47459 ... MA1618.1 ...
PTF1A pancreas Permissive Robust Mus musculus GSE47459 ... MA1618.1 ...
PTF1A 266-6 (pancreatic acinar tumor) Permissive Robust Mus musculus GSE27295 ... MA1618.1 ...
PTF1A neural tube Permissive Robust Mus musculus GSE55840 ... MA1618.1 ...
PTF1A pancreas Permissive Robust Mus musculus GSE86262 ... MA1618.1 ...
PTF1A pancreas Permissive Robust Mus musculus GSE86262 ... MA1618.1 ...