Detailed information of RXRG

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Dataset summary

TF Name: RXRG Species: Mus musculus
Cell-type/Tissue: F9 (embryonal carcinoma) Condition/Source: 48hr ATRA
JASPAR ID: MA0856.1 MA1149.1 MA1556.1 Collections: Permissive Robust
References: GEO GSE30538 GSM757805 GTRD EXP000689 PUBMED 21988834

External links

Models for profile: MA0856.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1149.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Models for profile: MA1556.1

Download TFBSs (mm10)

Download TFBSs in BED and FASTA format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
DAMO MACS MA0856.1 15.5 30 88.3 -6.60304110353994
DAMO MACS MA1149.1 11.5 37 84.1 -11.28783156405
DAMO MACS MA1556.1 1.5 3 84.3 NS

4 datasets found for the same TF (RXRG) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
RXRG F9 (embryonal carcinoma) 48hr ethanol Permissive Robust Mus musculus GSE30538 ... MA0856.1 ...
RXRG F9 (embryonal carcinoma) 2hr ATRA Permissive Robust Mus musculus GSE30538 ... MA0856.1 ...
RXRG F9 (embryonal carcinoma) 6hr ATRA Permissive Robust Mus musculus GSE30538 ... MA0856.1 ...
RXRG F9 (embryonal carcinoma) 24hr ATRA Permissive Robust Mus musculus GSE30538 ... MA0856.1 ...