UniBind RESTful API

This API provides an easy-to-use REST web interface to query/retrieve data from the UniBind database. The API comes with a human browsable interface and also a programmatic interface which return the results in different formats, including json, jsonp, yaml, bed, and also api for a browsable interface.

GET /api/v1/specific/?collection=Robust&format=api&page=7&q=&species=3702&summary=true

HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 78,
    "next": "https://unibind.uio.no/api/v1/specific/?collection=Robust&format=api&page=8&q=&species=3702&summary=true",
    "previous": "https://unibind.uio.no/api/v1/specific/?collection=Robust&format=api&page=6&q=&species=3702&summary=true",
    "results": [
        {
            "folder": {
                "folder": "EXP041469.12_day_old_seedlings.WRKY33",
                "tf_name": "WRKY33",
                "samples": [
                    {
                        "cell": {
                            "title": "12 day old seedlings"
                        },
                        "biological_condition": "untreated"
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSE85922"
                    },
                    {
                        "identifier": "PUBMED:28011690"
                    },
                    {
                        "identifier": "GEO:GSM2287860"
                    },
                    {
                        "identifier": "GTRD:EXP041469"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA1301.1",
            "bed_filename": "macs/DAMO/EXP041469.12_day_old_seedlings.WRKY33/EXP041469.12_day_old_seedlings.WRKY33.MA1301.1.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041469.12_day_old_seedlings.WRKY33/EXP041469.12_day_old_seedlings.WRKY33.MA1301.1.damo.fa",
            "profile_name": "WRKY33",
            "synonyms": [
                "AT2G38470",
                "ATWRKY33",
                "T19C21.4",
                "T19C21_4",
                "WRKY DNA-BINDING PROTEIN 33",
                "WRKY DNA-binding protein 33"
            ]
        },
        {
            "folder": {
                "folder": "EXP041470.12_day_old_seedlings.WRKY33",
                "tf_name": "WRKY33",
                "samples": [
                    {
                        "cell": {
                            "title": "12 day old seedlings"
                        },
                        "biological_condition": "flg22-treated"
                    }
                ],
                "references": [
                    {
                        "identifier": "PUBMED:28011690"
                    },
                    {
                        "identifier": "GEO:GSM2287861"
                    },
                    {
                        "identifier": "GEO:GSE85922"
                    },
                    {
                        "identifier": "GTRD:EXP041470"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA1301.1",
            "bed_filename": "macs/DAMO/EXP041470.12_day_old_seedlings.WRKY33/EXP041470.12_day_old_seedlings.WRKY33.MA1301.1.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041470.12_day_old_seedlings.WRKY33/EXP041470.12_day_old_seedlings.WRKY33.MA1301.1.damo.fa",
            "profile_name": "WRKY33",
            "synonyms": [
                "AT2G38470",
                "ATWRKY33",
                "T19C21.4",
                "T19C21_4",
                "WRKY DNA-BINDING PROTEIN 33",
                "WRKY DNA-binding protein 33"
            ]
        },
        {
            "folder": {
                "folder": "EXP041471.12_day_old_seedlings.WRKY18",
                "tf_name": "WRKY18",
                "samples": [
                    {
                        "cell": {
                            "title": "12 day old seedlings"
                        },
                        "biological_condition": "untreated"
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSE85922"
                    },
                    {
                        "identifier": "PUBMED:28011690"
                    },
                    {
                        "identifier": "GEO:GSM2287862"
                    },
                    {
                        "identifier": "GTRD:EXP041471"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA1077.1",
            "bed_filename": "macs/DAMO/EXP041471.12_day_old_seedlings.WRKY18/EXP041471.12_day_old_seedlings.WRKY18.MA1077.1.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041471.12_day_old_seedlings.WRKY18/EXP041471.12_day_old_seedlings.WRKY18.MA1077.1.damo.fa",
            "profile_name": "WRKY18",
            "synonyms": [
                "ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18",
                "AT4G31800",
                "ATWRKY18",
                "F11C18.16",
                "WRKY DNA-binding protein 18"
            ]
        },
        {
            "folder": {
                "folder": "EXP041472.12_day_old_seedlings.WRKY18",
                "tf_name": "WRKY18",
                "samples": [
                    {
                        "cell": {
                            "title": "12 day old seedlings"
                        },
                        "biological_condition": "flg22-treated"
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSE85922"
                    },
                    {
                        "identifier": "PUBMED:28011690"
                    },
                    {
                        "identifier": "GEO:GSM2287863"
                    },
                    {
                        "identifier": "GTRD:EXP041472"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA1077.1",
            "bed_filename": "macs/DAMO/EXP041472.12_day_old_seedlings.WRKY18/EXP041472.12_day_old_seedlings.WRKY18.MA1077.1.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041472.12_day_old_seedlings.WRKY18/EXP041472.12_day_old_seedlings.WRKY18.MA1077.1.damo.fa",
            "profile_name": "WRKY18",
            "synonyms": [
                "ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18",
                "AT4G31800",
                "ATWRKY18",
                "F11C18.16",
                "WRKY DNA-binding protein 18"
            ]
        },
        {
            "folder": {
                "folder": "EXP041474.12_day_old_seedlings.WRKY40",
                "tf_name": "WRKY40",
                "samples": [
                    {
                        "cell": {
                            "title": "12 day old seedlings"
                        },
                        "biological_condition": "flg22-treated"
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSM2287865"
                    },
                    {
                        "identifier": "GEO:GSE85922"
                    },
                    {
                        "identifier": "PUBMED:28011690"
                    },
                    {
                        "identifier": "GTRD:EXP041474"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA1085.2",
            "bed_filename": "macs/DAMO/EXP041474.12_day_old_seedlings.WRKY40/EXP041474.12_day_old_seedlings.WRKY40.MA1085.2.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041474.12_day_old_seedlings.WRKY40/EXP041474.12_day_old_seedlings.WRKY40.MA1085.2.damo.fa",
            "profile_name": "WRKY40",
            "synonyms": [
                "AT1G80840",
                "ATWRKY40",
                "F23A5.19",
                "F23A5_19",
                "WRKY DNA-binding protein 40"
            ]
        },
        {
            "folder": {
                "folder": "EXP041478.12_day_old_seedlings.WRKY18",
                "tf_name": "WRKY18",
                "samples": [
                    {
                        "cell": {
                            "title": "12 day old seedlings"
                        },
                        "biological_condition": "flg22-treated"
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSM2287871"
                    },
                    {
                        "identifier": "GEO:GSE85922"
                    },
                    {
                        "identifier": "PUBMED:28011690"
                    },
                    {
                        "identifier": "GTRD:EXP041478"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA1077.1",
            "bed_filename": "macs/DAMO/EXP041478.12_day_old_seedlings.WRKY18/EXP041478.12_day_old_seedlings.WRKY18.MA1077.1.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041478.12_day_old_seedlings.WRKY18/EXP041478.12_day_old_seedlings.WRKY18.MA1077.1.damo.fa",
            "profile_name": "WRKY18",
            "synonyms": [
                "ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18",
                "AT4G31800",
                "ATWRKY18",
                "F11C18.16",
                "WRKY DNA-binding protein 18"
            ]
        },
        {
            "folder": {
                "folder": "EXP041480.12_day_old_seedlings.WRKY40",
                "tf_name": "WRKY40",
                "samples": [
                    {
                        "cell": {
                            "title": "12 day old seedlings"
                        },
                        "biological_condition": "flg22-treated"
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSE85922"
                    },
                    {
                        "identifier": "PUBMED:28011690"
                    },
                    {
                        "identifier": "GEO:GSM2287873"
                    },
                    {
                        "identifier": "GTRD:EXP041480"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA1085.2",
            "bed_filename": "macs/DAMO/EXP041480.12_day_old_seedlings.WRKY40/EXP041480.12_day_old_seedlings.WRKY40.MA1085.2.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041480.12_day_old_seedlings.WRKY40/EXP041480.12_day_old_seedlings.WRKY40.MA1085.2.damo.fa",
            "profile_name": "WRKY40",
            "synonyms": [
                "AT1G80840",
                "ATWRKY40",
                "F23A5.19",
                "F23A5_19",
                "WRKY DNA-binding protein 40"
            ]
        },
        {
            "folder": {
                "folder": "EXP041484.above-ground_tissue.FLC",
                "tf_name": "FLC",
                "samples": [
                    {
                        "cell": {
                            "title": "above-ground tissue"
                        },
                        "biological_condition": "Col FRI genotype"
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSM2392630"
                    },
                    {
                        "identifier": "GEO:GSM2392632"
                    },
                    {
                        "identifier": "PUBMED:29203652"
                    },
                    {
                        "identifier": "GEO:GSE89889"
                    },
                    {
                        "identifier": "GTRD:EXP041484"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA0558.1",
            "bed_filename": "macs/DAMO/EXP041484.above-ground_tissue.FLC/EXP041484.above-ground_tissue.FLC.MA0558.1.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041484.above-ground_tissue.FLC/EXP041484.above-ground_tissue.FLC.MA0558.1.damo.fa",
            "profile_name": "FLC",
            "synonyms": null
        },
        {
            "folder": {
                "folder": "EXP041523.inflorescence.LFY",
                "tf_name": "LFY",
                "samples": [
                    {
                        "cell": {
                            "title": "inflorescence"
                        },
                        "biological_condition": "treatment with a solution containing 10 μM dexamethasone (Sigma-Aldrich), 0.01% (v/v) ethanol, and 0.015% (v/v) Silwet L-77 (De Sangosse)."
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSE96806"
                    },
                    {
                        "identifier": "PUBMED:28385730"
                    },
                    {
                        "identifier": "GEO:GSM2544348"
                    },
                    {
                        "identifier": "GTRD:EXP041523"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA0590.1",
            "bed_filename": "macs/DAMO/EXP041523.inflorescence.LFY/EXP041523.inflorescence.LFY.MA0590.1.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041523.inflorescence.LFY/EXP041523.inflorescence.LFY.MA0590.1.damo.fa",
            "profile_name": "LFY",
            "synonyms": [
                "AT5G61850",
                "LEAFY",
                "LEAFY 3",
                "LFY3",
                "MAC9.13",
                "MAC9_13",
                "floral meristem identity control protein LEAFY (LFY)"
            ]
        },
        {
            "folder": {
                "folder": "EXP041541.14_day_old_seedling.REF6",
                "tf_name": "REF6",
                "samples": [
                    {
                        "cell": {
                            "title": "14 day old seedling"
                        },
                        "biological_condition": "Plants were grown in 1/2MS media with 22 degree in 16h light/8h dark"
                    }
                ],
                "references": [
                    {
                        "identifier": "GEO:GSM1869290"
                    },
                    {
                        "identifier": "PUBMED:27111034"
                    },
                    {
                        "identifier": "GEO:GSE72735"
                    },
                    {
                        "identifier": "GTRD:EXP041541"
                    }
                ],
                "species": {
                    "name": "Arabidopsis thaliana"
                }
            },
            "jaspar_id": "MA1415.1",
            "bed_filename": "macs/DAMO/EXP041541.14_day_old_seedling.REF6/EXP041541.14_day_old_seedling.REF6.MA1415.1.damo.bed",
            "fasta_filename": "macs/DAMO/EXP041541.14_day_old_seedling.REF6/EXP041541.14_day_old_seedling.REF6.MA1415.1.damo.fa",
            "profile_name": "REF6",
            "synonyms": [
                "AT3G48430",
                "JMJ12",
                "Jumonji domain-containing protein 12",
                "relative of early flowering 6"
            ]
        }
    ]
}

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Raw data

Folder

Peak caller

Distance threshold

Score threshold

Adj centrimo pvalue

Total tfbs

Specific Datasets List