Specific Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/specific/?collection=Robust&format=api&page=3&q=&species=10090&summary=true
{ "count": 4955, "next": "https://unibind.uio.no/api/v1/specific/?collection=Robust&format=api&page=4&q=&species=10090&summary=true", "previous": "https://unibind.uio.no/api/v1/specific/?collection=Robust&format=api&page=2&q=&species=10090&summary=true", "results": [ { "folder": { "folder": "EXP000020.embryonic_stem_cells.SOX2", "tf_name": "SOX2", "samples": [ { "cell": { "title": "embryonic stem cells" }, "biological_condition": "" } ], "references": [ { "identifier": "PUBMED:18692474" }, { "identifier": "GEO:GSM307139" }, { "identifier": "GEO:GSM307138" }, { "identifier": "GEO:GSE11724" }, { "identifier": "GTRD:EXP000020" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0142.1", "bed_filename": "macs/DAMO/EXP000020.embryonic_stem_cells.SOX2/EXP000020.embryonic_stem_cells.SOX2.MA0142.1.damo.bed", "fasta_filename": "macs/DAMO/EXP000020.embryonic_stem_cells.SOX2/EXP000020.embryonic_stem_cells.SOX2.MA0142.1.damo.fa", "profile_name": "Pou5f1::Sox2", "synonyms": [ "NF-A3", "Oct-3", "Oct-3/4", "Oct-4", "Oct3", "Oct3/4", "Oct4", "Otf-3", "Otf-4", "Otf3", "Otf3-rs7", "Otf3g", "Otf4", "POU domain class 5 transcription factor 1 transcript variant 2 oct4b'", "POU domain class 5 transcription factor 1 transcript variant 3 oct4b", "POU domain, class 5, transcription factor 1", "SRY (sex determining region Y)-box 2", "SRY-box containing gene 2", "Sox-2", "lcc", "octamer-binding protein 3", "octamer-binding protein 4", "octamer-binding transcription factor 3", "octamer-binding transcription factor 4 alternative", "transcription factor SOX-2", "ysb" ] }, { "folder": { "folder": "EXP000020.embryonic_stem_cells.SOX2", "tf_name": "SOX2", "samples": [ { "cell": { "title": "embryonic stem cells" }, "biological_condition": "" } ], "references": [ { "identifier": "PUBMED:18692474" }, { "identifier": "GEO:GSM307139" }, { "identifier": "GEO:GSM307138" }, { "identifier": "GEO:GSE11724" }, { "identifier": "GTRD:EXP000020" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0143.4", "bed_filename": "macs/DAMO/EXP000020.embryonic_stem_cells.SOX2/EXP000020.embryonic_stem_cells.SOX2.MA0143.4.damo.bed", "fasta_filename": "macs/DAMO/EXP000020.embryonic_stem_cells.SOX2/EXP000020.embryonic_stem_cells.SOX2.MA0143.4.damo.fa", "profile_name": "SOX2", "synonyms": [ "ANOP3", "MCOPS3", "SRY (sex determining region Y)-box 2", "SRY-box 2", "SRY-box transcription factor 2", "SRY-related HMG-box gene 2", "sex determining region Y-box 2", "transcription factor SOX-2", "transcription factor SOX2" ] }, { "folder": { "folder": "EXP000022.embryonic_stem_cells.TCF7L1", "tf_name": "TCF7L1", "samples": [ { "cell": { "title": "embryonic stem cells" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE11724" }, { "identifier": "GEO:GSM307142" }, { "identifier": "GEO:GSM307143" }, { "identifier": "PUBMED:18692474" }, { "identifier": "GTRD:EXP000022" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA1421.1", "bed_filename": "macs/DAMO/EXP000022.embryonic_stem_cells.TCF7L1/EXP000022.embryonic_stem_cells.TCF7L1.MA1421.1.damo.bed", "fasta_filename": "macs/DAMO/EXP000022.embryonic_stem_cells.TCF7L1/EXP000022.embryonic_stem_cells.TCF7L1.MA1421.1.damo.fa", "profile_name": "TCF7L1", "synonyms": [ "HMG box transcription factor 3", "TCF-3", "TCF3", "transcription factor 7 like 1", "transcription factor 7-like 1", "transcription factor 7-like 1 (T-cell specific, HMG-box)" ] }, { "folder": { "folder": "EXP000035.BMDM_bone_marrow-derived_macrophages.BCL6", "tf_name": "BCL6", "samples": [ { "cell": { "title": "BMDM (bone marrow-derived macrophages)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE16723" }, { "identifier": "PUBMED:21106671" }, { "identifier": "GEO:GSM851557" }, { "identifier": "GEO:GSM419049" }, { "identifier": "GTRD:EXP000035" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0463.2", "bed_filename": "macs/DAMO/EXP000035.BMDM_bone_marrow-derived_macrophages.BCL6/EXP000035.BMDM_bone_marrow-derived_macrophages.BCL6.MA0463.2.damo.bed", "fasta_filename": "macs/DAMO/EXP000035.BMDM_bone_marrow-derived_macrophages.BCL6/EXP000035.BMDM_bone_marrow-derived_macrophages.BCL6.MA0463.2.damo.fa", "profile_name": "BCL6", "synonyms": [ "B cell CLL/lymphoma 6", "B-cell lymphoma 5 protein", "B-cell lymphoma 6 protein", "B-cell lymphoma 6 protein transcript", "BCL-5", "BCL-6", "BCL5", "BCL6 transcription repressor", "BCL6A", "LAZ3", "ZBTB27", "ZNF51", "cys-his2 zinc finger transcription factor", "lymphoma-associated zinc finger gene on chromosome 3", "protein LAZ-3", "zinc finger and BTB domain-containing protein 27", "zinc finger protein 51", "zinc finger transcription factor BCL6S" ] }, { "folder": { "folder": "EXP000036.BMDM_bone_marrow-derived_macrophages.RELA", "tf_name": "RELA", "samples": [ { "cell": { "title": "BMDM (bone marrow-derived macrophages)" }, "biological_condition": "3 hr LPS stimulated macrophages" } ], "references": [ { "identifier": "GEO:GSE16723" }, { "identifier": "PUBMED:21106671" }, { "identifier": "GEO:GSM611116" }, { "identifier": "GEO:GSM611117" }, { "identifier": "GTRD:EXP000036" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0107.1", "bed_filename": "macs/DAMO/EXP000036.BMDM_bone_marrow-derived_macrophages.RELA/EXP000036.BMDM_bone_marrow-derived_macrophages.RELA.MA0107.1.damo.bed", "fasta_filename": "macs/DAMO/EXP000036.BMDM_bone_marrow-derived_macrophages.RELA/EXP000036.BMDM_bone_marrow-derived_macrophages.RELA.MA0107.1.damo.fa", "profile_name": "RELA", "synonyms": [ "CMCU", "NF-kappa-B p65delta3", "NF-kappa-B transcription factor p65", "NFKB3", "RELA proto-oncogene, NF-kB subunit", "nuclear factor NF-kappa-B p65 subunit", "nuclear factor of kappa light polypeptide gene enhancer in B-cells 3", "p65", "transcription factor p65", "v-rel avian reticuloendotheliosis viral oncogene homolog A" ] }, { "folder": { "folder": "EXP000037.BMDM_bone_marrow-derived_macrophages.BCL6", "tf_name": "BCL6", "samples": [ { "cell": { "title": "BMDM (bone marrow-derived macrophages)" }, "biological_condition": "3 hr LPS stimulated macrophages" } ], "references": [ { "identifier": "PUBMED:21106671" }, { "identifier": "GEO:GSE16723" }, { "identifier": "GEO:GSM611114" }, { "identifier": "GEO:GSM611115" }, { "identifier": "GTRD:EXP000037" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0463.2", "bed_filename": "macs/DAMO/EXP000037.BMDM_bone_marrow-derived_macrophages.BCL6/EXP000037.BMDM_bone_marrow-derived_macrophages.BCL6.MA0463.2.damo.bed", "fasta_filename": "macs/DAMO/EXP000037.BMDM_bone_marrow-derived_macrophages.BCL6/EXP000037.BMDM_bone_marrow-derived_macrophages.BCL6.MA0463.2.damo.fa", "profile_name": "BCL6", "synonyms": [ "B cell CLL/lymphoma 6", "B-cell lymphoma 5 protein", "B-cell lymphoma 6 protein", "B-cell lymphoma 6 protein transcript", "BCL-5", "BCL-6", "BCL5", "BCL6 transcription repressor", "BCL6A", "LAZ3", "ZBTB27", "ZNF51", "cys-his2 zinc finger transcription factor", "lymphoma-associated zinc finger gene on chromosome 3", "protein LAZ-3", "zinc finger and BTB domain-containing protein 27", "zinc finger protein 51", "zinc finger transcription factor BCL6S" ] }, { "folder": { "folder": "EXP000041.3T3-L1-derived_adipocytes.PPARG", "tf_name": "PPARG", "samples": [ { "cell": { "title": "3T3-L1-derived adipocytes" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM535769" }, { "identifier": "PUBMED:20887899" }, { "identifier": "GEO:GSE21365" }, { "identifier": "GTRD:EXP000041" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0065.2", "bed_filename": "macs/DAMO/EXP000041.3T3-L1-derived_adipocytes.PPARG/EXP000041.3T3-L1-derived_adipocytes.PPARG.MA0065.2.damo.bed", "fasta_filename": "macs/DAMO/EXP000041.3T3-L1-derived_adipocytes.PPARG/EXP000041.3T3-L1-derived_adipocytes.PPARG.MA0065.2.damo.fa", "profile_name": "Pparg::Rxra", "synonyms": [ "9530071D11Rik", "Nr1c3", "Nr2b1", "PPAR-gamma", "PPAR-gamma2", "PPARgamma", "PPARgamma2", "RXR alpha 1", "RXRalpha1", "nuclear receptor subfamily 1 group C member 3", "nuclear receptor subfamily 2 group B member 1", "peroxisome proliferator activated receptor gamma", "peroxisome proliferator activated receptor gamma 2", "peroxisome proliferator activated receptor gamma 4", "peroxisome proliferator-activated receptor gamma", "retinoic acid receptor RXR-alpha", "retinoid X receptor alpha" ] }, { "folder": { "folder": "EXP000041.3T3-L1-derived_adipocytes.PPARG", "tf_name": "PPARG", "samples": [ { "cell": { "title": "3T3-L1-derived adipocytes" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM535769" }, { "identifier": "PUBMED:20887899" }, { "identifier": "GEO:GSE21365" }, { "identifier": "GTRD:EXP000041" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0066.1", "bed_filename": "macs/DAMO/EXP000041.3T3-L1-derived_adipocytes.PPARG/EXP000041.3T3-L1-derived_adipocytes.PPARG.MA0066.1.damo.bed", "fasta_filename": "macs/DAMO/EXP000041.3T3-L1-derived_adipocytes.PPARG/EXP000041.3T3-L1-derived_adipocytes.PPARG.MA0066.1.damo.fa", "profile_name": "PPARG", "synonyms": [ "CIMT1", "GLM1", "NR1C3", "PPAR-gamma", "PPARG1", "PPARG2", "PPARG5", "PPARgamma", "nuclear receptor subfamily 1 group C member 3", "peroxisome proliferator activated receptor gamma", "peroxisome proliferator-activated nuclear receptor gamma variant 1", "peroxisome proliferator-activated receptor gamma", "peroxisome proliferator-activated receptor-gamma 5", "peroxisome proliferator-activated receptor-gamma splicing" ] }, { "folder": { "folder": "EXP000042.3T3-L1-derived_adipocytes.PPARG", "tf_name": "PPARG", "samples": [ { "cell": { "title": "3T3-L1-derived adipocytes" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM535770" }, { "identifier": "GEO:GSE21365" }, { "identifier": "PUBMED:20887899" }, { "identifier": "GTRD:EXP000042" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0065.2", "bed_filename": "macs/DAMO/EXP000042.3T3-L1-derived_adipocytes.PPARG/EXP000042.3T3-L1-derived_adipocytes.PPARG.MA0065.2.damo.bed", "fasta_filename": "macs/DAMO/EXP000042.3T3-L1-derived_adipocytes.PPARG/EXP000042.3T3-L1-derived_adipocytes.PPARG.MA0065.2.damo.fa", "profile_name": "Pparg::Rxra", "synonyms": [ "9530071D11Rik", "Nr1c3", "Nr2b1", "PPAR-gamma", "PPAR-gamma2", "PPARgamma", "PPARgamma2", "RXR alpha 1", "RXRalpha1", "nuclear receptor subfamily 1 group C member 3", "nuclear receptor subfamily 2 group B member 1", "peroxisome proliferator activated receptor gamma", "peroxisome proliferator activated receptor gamma 2", "peroxisome proliferator activated receptor gamma 4", "peroxisome proliferator-activated receptor gamma", "retinoic acid receptor RXR-alpha", "retinoid X receptor alpha" ] }, { "folder": { "folder": "EXP000042.3T3-L1-derived_adipocytes.PPARG", "tf_name": "PPARG", "samples": [ { "cell": { "title": "3T3-L1-derived adipocytes" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM535770" }, { "identifier": "GEO:GSE21365" }, { "identifier": "PUBMED:20887899" }, { "identifier": "GTRD:EXP000042" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0066.1", "bed_filename": "macs/DAMO/EXP000042.3T3-L1-derived_adipocytes.PPARG/EXP000042.3T3-L1-derived_adipocytes.PPARG.MA0066.1.damo.bed", "fasta_filename": "macs/DAMO/EXP000042.3T3-L1-derived_adipocytes.PPARG/EXP000042.3T3-L1-derived_adipocytes.PPARG.MA0066.1.damo.fa", "profile_name": "PPARG", "synonyms": [ "CIMT1", "GLM1", "NR1C3", "PPAR-gamma", "PPARG1", "PPARG2", "PPARG5", "PPARgamma", "nuclear receptor subfamily 1 group C member 3", "peroxisome proliferator activated receptor gamma", "peroxisome proliferator-activated nuclear receptor gamma variant 1", "peroxisome proliferator-activated receptor gamma", "peroxisome proliferator-activated receptor-gamma 5", "peroxisome proliferator-activated receptor-gamma splicing" ] } ] }