Specific Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/specific/?collection=Robust&format=api&page=2&q=&species=3702&summary=true
{ "count": 78, "next": "https://unibind.uio.no/api/v1/specific/?collection=Robust&format=api&page=3&q=&species=3702&summary=true", "previous": "https://unibind.uio.no/api/v1/specific/?collection=Robust&format=api&q=&species=3702&summary=true", "results": [ { "folder": { "folder": "EXP041223.4_day_old_seedlings.FHY3", "tf_name": "FHY3", "samples": [ { "cell": { "title": "4 day old seedlings" }, "biological_condition": "Far-Red (35S:3FLAG-FHY3-3HA fhy3-4 transgenic line)" } ], "references": [ { "identifier": "GEO:GSE30711" }, { "identifier": "GEO:GSM761690" }, { "identifier": "PUBMED:21803941" }, { "identifier": "GTRD:EXP041223" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0557.1", "bed_filename": "macs/DAMO/EXP041223.4_day_old_seedlings.FHY3/EXP041223.4_day_old_seedlings.FHY3.MA0557.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041223.4_day_old_seedlings.FHY3/EXP041223.4_day_old_seedlings.FHY3.MA0557.1.damo.fa", "profile_name": "FHY3", "synonyms": [ "AT3G22170", "CHLOROPLAST DIVISION MUTANT 45", "CPD45", "far-red elongated hypocotyls 3" ] }, { "folder": { "folder": "EXP041225.14_day_old_seedling.PIF5", "tf_name": "PIF5", "samples": [ { "cell": { "title": "14 day old seedling" }, "biological_condition": "low R/FR light (PIF5-HA overexpressor Flag tagged)" } ], "references": [ { "identifier": "GEO:GSE35059" }, { "identifier": "GEO:GSM861508" }, { "identifier": "GTRD:EXP041225" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0562.1", "bed_filename": "macs/DAMO/EXP041225.14_day_old_seedling.PIF5/EXP041225.14_day_old_seedling.PIF5.MA0562.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041225.14_day_old_seedling.PIF5/EXP041225.14_day_old_seedling.PIF5.MA0562.1.damo.fa", "profile_name": "PIF5", "synonyms": [ "AT3G59060", "PHYTOCHROME-INTERACTING FACTOR 5", "PIF5", "phytochrome interacting factor 3-like 6" ] }, { "folder": { "folder": "EXP041226.complete_seedlings.PIF4", "tf_name": "PIF4", "samples": [ { "cell": { "title": "complete seedlings" }, "biological_condition": "genotype: pPIF4::PIF4-myc (grown in the dark for 5 days)" } ], "references": [ { "identifier": "GEO:GSM865709" }, { "identifier": "GEO:GSE35315" }, { "identifier": "GTRD:EXP041226" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0561.1", "bed_filename": "macs/DAMO/EXP041226.complete_seedlings.PIF4/EXP041226.complete_seedlings.PIF4.MA0561.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041226.complete_seedlings.PIF4/EXP041226.complete_seedlings.PIF4.MA0561.1.damo.fa", "profile_name": "PIF4", "synonyms": [ "AT2G43010", "AtPIF4", "MFL8.13", "MFL8_13", "SRL2", "phytochrome interacting factor 4" ] }, { "folder": { "folder": "EXP041239.floral_tissue.PI", "tf_name": "PI", "samples": [ { "cell": { "title": "floral tissue" }, "biological_condition": "PI-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers)" } ], "references": [ { "identifier": "PUBMED:22847437" }, { "identifier": "GEO:GSE38358" }, { "identifier": "GEO:GSM940585" }, { "identifier": "GTRD:EXP041239" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0559.1", "bed_filename": "macs/DAMO/EXP041239.floral_tissue.PI/EXP041239.floral_tissue.PI.MA0559.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041239.floral_tissue.PI/EXP041239.floral_tissue.PI.MA0559.1.damo.fa", "profile_name": "PI", "synonyms": [ "AT5G20240", "F5O24.130", "F5O24_130", "FLORAL HOMEOTIC PROTEIN PISTILLATA", "K-box region and MADS-box transcription factor family protein", "PISTILLATA" ] }, { "folder": { "folder": "EXP041240.floral_tissue.AP3", "tf_name": "AP3", "samples": [ { "cell": { "title": "floral tissue" }, "biological_condition": "AP3-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers)" } ], "references": [ { "identifier": "GEO:GSM940586" }, { "identifier": "GEO:GSE38358" }, { "identifier": "PUBMED:22847437" }, { "identifier": "GTRD:EXP041240" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0556.1", "bed_filename": "macs/DAMO/EXP041240.floral_tissue.AP3/EXP041240.floral_tissue.AP3.MA0556.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041240.floral_tissue.AP3/EXP041240.floral_tissue.AP3.MA0556.1.damo.fa", "profile_name": "AP3", "synonyms": [ "APETALA 3", "AT3G54340", "ATAP3", "FLORAL HOMEOTIC PROTEIN APETALA 3", "K-box region and MADS-box transcription factor family protein" ] }, { "folder": { "folder": "EXP041247.2_day_old_seedlings.PIF3", "tf_name": "PIF3", "samples": [ { "cell": { "title": "2 day old seedlings" }, "biological_condition": "true dark; pif3-3 genotype" } ], "references": [ { "identifier": "GEO:GSM958269" }, { "identifier": "PUBMED:23382695" }, { "identifier": "GEO:GSE39215" }, { "identifier": "GEO:GSM958271" }, { "identifier": "GEO:GSM958270" }, { "identifier": "GEO:GSM958272" }, { "identifier": "GTRD:EXP041247" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0560.1", "bed_filename": "macs/DAMO/EXP041247.2_day_old_seedlings.PIF3/EXP041247.2_day_old_seedlings.PIF3.MA0560.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041247.2_day_old_seedlings.PIF3/EXP041247.2_day_old_seedlings.PIF3.MA0560.1.damo.fa", "profile_name": "PIF3", "synonyms": [ "AT1G09530", "F14J9.19", "F14J9_19", "PAP3", "PHOTOCURRENT 1", "PHYTOCHROME INTERACTING FACTOR 3", "PHYTOCHROME-ASSOCIATED PROTEIN 3", "POC1", "phytochrome interacting factor 3", "purple acid phosphatase 3" ] }, { "folder": { "folder": "EXP041262.3_day_old_seedlings.PIF1", "tf_name": "PIF1", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "Myc-epitope-tagged-PIF1 (P1M)" } ], "references": [ { "identifier": "GEO:GSM1059957" }, { "identifier": "PUBMED:25122696" }, { "identifier": "GEO:GSE43283" }, { "identifier": "GTRD:EXP041262" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0552.1", "bed_filename": "macs/DAMO/EXP041262.3_day_old_seedlings.PIF1/EXP041262.3_day_old_seedlings.PIF1.MA0552.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041262.3_day_old_seedlings.PIF1/EXP041262.3_day_old_seedlings.PIF1.MA0552.1.damo.fa", "profile_name": "PIF1", "synonyms": [ "AT2G20180", "PHY-INTERACTING FACTOR 1", "PIF1", "T2G17.2", "T2G17_2", "phytochrome interacting factor 3-like 5" ] }, { "folder": { "folder": "EXP041263.3_day_old_seedlings.PIF1", "tf_name": "PIF1", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "Myc-epitope-tagged-PIF1 (P1M)" } ], "references": [ { "identifier": "PUBMED:25122696" }, { "identifier": "GEO:GSM1059958" }, { "identifier": "GEO:GSE43283" }, { "identifier": "GTRD:EXP041263" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0552.1", "bed_filename": "macs/DAMO/EXP041263.3_day_old_seedlings.PIF1/EXP041263.3_day_old_seedlings.PIF1.MA0552.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041263.3_day_old_seedlings.PIF1/EXP041263.3_day_old_seedlings.PIF1.MA0552.1.damo.fa", "profile_name": "PIF1", "synonyms": [ "AT2G20180", "PHY-INTERACTING FACTOR 1", "PIF1", "T2G17.2", "T2G17_2", "phytochrome interacting factor 3-like 5" ] }, { "folder": { "folder": "EXP041264.3_day_old_seedlings.PIF1", "tf_name": "PIF1", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "Myc-epitope-tagged-PIF1 (P1M)" } ], "references": [ { "identifier": "PUBMED:25122696" }, { "identifier": "GEO:GSM1059959" }, { "identifier": "GEO:GSE43283" }, { "identifier": "GTRD:EXP041264" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0552.1", "bed_filename": "macs/DAMO/EXP041264.3_day_old_seedlings.PIF1/EXP041264.3_day_old_seedlings.PIF1.MA0552.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041264.3_day_old_seedlings.PIF1/EXP041264.3_day_old_seedlings.PIF1.MA0552.1.damo.fa", "profile_name": "PIF1", "synonyms": [ "AT2G20180", "PHY-INTERACTING FACTOR 1", "PIF1", "T2G17.2", "T2G17_2", "phytochrome interacting factor 3-like 5" ] }, { "folder": { "folder": "EXP041270.3_day_old_seedlings.PIF4", "tf_name": "PIF4", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "Myc-epitope-tagged-PIF4 (P1M)" } ], "references": [ { "identifier": "PUBMED:25122696" }, { "identifier": "GEO:GSM1059965" }, { "identifier": "GEO:GSE43284" }, { "identifier": "GTRD:EXP041270" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0561.1", "bed_filename": "macs/DAMO/EXP041270.3_day_old_seedlings.PIF4/EXP041270.3_day_old_seedlings.PIF4.MA0561.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041270.3_day_old_seedlings.PIF4/EXP041270.3_day_old_seedlings.PIF4.MA0561.1.damo.fa", "profile_name": "PIF4", "synonyms": [ "AT2G43010", "AtPIF4", "MFL8.13", "MFL8_13", "SRL2", "phytochrome interacting factor 4" ] } ] }