Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?format=api&q=SRF&summary=true
{ "count": 96, "next": "https://unibind.uio.no/api/v1/datasets/?format=api&page=2&q=SRF&summary=true", "previous": null, "results": [ { "folder": "EXP032542.NIH_3T3_embryonic_fibroblasts.ELK3", "tf_name": "ELK3", "samples": [ { "cell": { "title": "NIH 3T3 (embryonic fibroblasts)" }, "biological_condition": "Latrunculin B 0.3uM" } ], "references": [ { "identifier": "GEO:GSM1118325" }, { "identifier": "GEO:GSE45888" }, { "identifier": "PUBMED:24732378" }, { "identifier": "GTRD:EXP032542" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0759.1", "bed_filename": "macs/DAMO/EXP032542.NIH_3T3_embryonic_fibroblasts.ELK3/EXP032542.NIH_3T3_embryonic_fibroblasts.ELK3.MA0759.1.damo.bed", "fasta_filename": "macs/DAMO/EXP032542.NIH_3T3_embryonic_fibroblasts.ELK3/EXP032542.NIH_3T3_embryonic_fibroblasts.ELK3.MA0759.1.damo.fa", "profile_name": "ELK3", "synonyms": [ "ELK3, ETS transcription factor", "ELK3, ETS-domain protein (SRF accessory protein 2)", "ERP", "ETS domain-containing protein Elk-3", "ETS transcription factor ELK3", "ETS-related protein ERP", "ETS-related protein NET", "NET", "SAP-2", "SAP2", "SRF accessory protein 2", "serum response factor accessory protein 2" ] } ] }, { "folder": "EXP032543.NIH_3T3_embryonic_fibroblasts.ELK3", "tf_name": "ELK3", "samples": [ { "cell": { "title": "NIH 3T3 (embryonic fibroblasts)" }, "biological_condition": "U0126 10uM" } ], "references": [ { "identifier": "PUBMED:24732378" }, { "identifier": "GEO:GSM1118326" }, { "identifier": "GEO:GSE45888" }, { "identifier": "GTRD:EXP032543" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0759.1", "bed_filename": "macs/DAMO/EXP032543.NIH_3T3_embryonic_fibroblasts.ELK3/EXP032543.NIH_3T3_embryonic_fibroblasts.ELK3.MA0759.1.damo.bed", "fasta_filename": "macs/DAMO/EXP032543.NIH_3T3_embryonic_fibroblasts.ELK3/EXP032543.NIH_3T3_embryonic_fibroblasts.ELK3.MA0759.1.damo.fa", "profile_name": "ELK3", "synonyms": [ "ELK3, ETS transcription factor", "ELK3, ETS-domain protein (SRF accessory protein 2)", "ERP", "ETS domain-containing protein Elk-3", "ETS transcription factor ELK3", "ETS-related protein ERP", "ETS-related protein NET", "NET", "SAP-2", "SAP2", "SRF accessory protein 2", "serum response factor accessory protein 2" ] } ] }, { "folder": "EXP054859.HUVEC-C_HUVEC_umbilical_vein_endothelial_cells.ELK3", "tf_name": "ELK3", "samples": [ { "cell": { "title": "HUVEC-C (HUVEC, umbilical vein endothelial cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE60156" }, { "identifier": "PUBMED:25401928" }, { "identifier": "GEO:GSM1466691" }, { "identifier": "GTRD:EXP054859" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0759.1", "bed_filename": "macs/DAMO/EXP054859.HUVEC-C_HUVEC_umbilical_vein_endothelial_cells.ELK3/EXP054859.HUVEC-C_HUVEC_umbilical_vein_endothelial_cells.ELK3.MA0759.1.damo.bed", "fasta_filename": "macs/DAMO/EXP054859.HUVEC-C_HUVEC_umbilical_vein_endothelial_cells.ELK3/EXP054859.HUVEC-C_HUVEC_umbilical_vein_endothelial_cells.ELK3.MA0759.1.damo.fa", "profile_name": "ELK3", "synonyms": [ "ELK3, ETS transcription factor", "ELK3, ETS-domain protein (SRF accessory protein 2)", "ERP", "ETS domain-containing protein Elk-3", "ETS transcription factor ELK3", "ETS-related protein ERP", "ETS-related protein NET", "NET", "SAP-2", "SAP2", "SRF accessory protein 2", "serum response factor accessory protein 2" ] } ] }, { "folder": "EXP034999.embryonic_stem_cell-derived_mesoderm.ELK4", "tf_name": "ELK4", "samples": [ { "cell": { "title": "embryonic stem cell-derived mesoderm" }, "biological_condition": "none" } ], "references": [ { "identifier": "GEO:GSE69099" }, { "identifier": "PUBMED:26923725" }, { "identifier": "GEO:GSM1692866" }, { "identifier": "GTRD:EXP034999" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0076.2", "bed_filename": "macs/DAMO/EXP034999.embryonic_stem_cell-derived_mesoderm.ELK4/EXP034999.embryonic_stem_cell-derived_mesoderm.ELK4.MA0076.2.damo.bed", "fasta_filename": "macs/DAMO/EXP034999.embryonic_stem_cell-derived_mesoderm.ELK4/EXP034999.embryonic_stem_cell-derived_mesoderm.ELK4.MA0076.2.damo.fa", "profile_name": "ELK4", "synonyms": [ "ELK4, ETS transcription factor", "ELK4, ETS-domain protein (SRF accessory protein 1)", "ETS domain-containing protein Elk-4", "ETS transcription factor ELK4", "SAP-1", "SAP1", "serum response factor accessory protein 1" ] } ] }, { "folder": "ENCSR000EVB.HEK293_embryonic_kidney.ELK4", "tf_name": "ELK4", "samples": [ { "cell": { "title": "HEK293 (embryonic kidney)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR000EVB" }, { "identifier": "GTRD:EXP010642" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0076.2", "bed_filename": "macs/DAMO/ENCSR000EVB.HEK293_embryonic_kidney.ELK4/ENCSR000EVB.HEK293_embryonic_kidney.ELK4.MA0076.2.damo.bed", "fasta_filename": "macs/DAMO/ENCSR000EVB.HEK293_embryonic_kidney.ELK4/ENCSR000EVB.HEK293_embryonic_kidney.ELK4.MA0076.2.damo.fa", "profile_name": "ELK4", "synonyms": [ "ELK4, ETS transcription factor", "ELK4, ETS-domain protein (SRF accessory protein 1)", "ETS domain-containing protein Elk-4", "ETS transcription factor ELK4", "SAP-1", "SAP1", "serum response factor accessory protein 1" ] } ] }, { "folder": "ENCSR000EVI.HeLa_S3_cervical_adenocarcinoma.ELK4", "tf_name": "ELK4", "samples": [ { "cell": { "title": "HeLa S3 (cervical adenocarcinoma)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR000EVI" }, { "identifier": "GTRD:EXP010092" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0076.2", "bed_filename": "macs/DAMO/ENCSR000EVI.HeLa_S3_cervical_adenocarcinoma.ELK4/ENCSR000EVI.HeLa_S3_cervical_adenocarcinoma.ELK4.MA0076.2.damo.bed", "fasta_filename": "macs/DAMO/ENCSR000EVI.HeLa_S3_cervical_adenocarcinoma.ELK4/ENCSR000EVI.HeLa_S3_cervical_adenocarcinoma.ELK4.MA0076.2.damo.fa", "profile_name": "ELK4", "synonyms": [ "ELK4, ETS transcription factor", "ELK4, ETS-domain protein (SRF accessory protein 1)", "ETS domain-containing protein Elk-4", "ETS transcription factor ELK4", "SAP-1", "SAP1", "serum response factor accessory protein 1" ] } ] }, { "folder": "EXP000103.HEK293_embryonic_kidney.ELK4", "tf_name": "ELK4", "samples": [ { "cell": { "title": "HEK293 (embryonic kidney)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE27929" }, { "identifier": "PUBMED:21343339" }, { "identifier": "GEO:GSM700361" }, { "identifier": "GEO:GSM700360" }, { "identifier": "GTRD:EXP000103" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0076.2", "bed_filename": "macs/DAMO/EXP000103.HEK293_embryonic_kidney.ELK4/EXP000103.HEK293_embryonic_kidney.ELK4.MA0076.2.damo.bed", "fasta_filename": "macs/DAMO/EXP000103.HEK293_embryonic_kidney.ELK4/EXP000103.HEK293_embryonic_kidney.ELK4.MA0076.2.damo.fa", "profile_name": "ELK4", "synonyms": [ "ELK4, ETS transcription factor", "ELK4, ETS-domain protein (SRF accessory protein 1)", "ETS domain-containing protein Elk-4", "ETS transcription factor ELK4", "SAP-1", "SAP1", "serum response factor accessory protein 1" ] } ] }, { "folder": "EXP000581.HeLa_S3_cervical_adenocarcinoma.ELK4", "tf_name": "ELK4", "samples": [ { "cell": { "title": "HeLa S3 (cervical adenocarcinoma)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE24685" }, { "identifier": "GEO:GSM608162" }, { "identifier": "GEO:GSM608161" }, { "identifier": "PUBMED:21126370" }, { "identifier": "GTRD:EXP000581" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0076.2", "bed_filename": "macs/DAMO/EXP000581.HeLa_S3_cervical_adenocarcinoma.ELK4/EXP000581.HeLa_S3_cervical_adenocarcinoma.ELK4.MA0076.2.damo.bed", "fasta_filename": "macs/DAMO/EXP000581.HeLa_S3_cervical_adenocarcinoma.ELK4/EXP000581.HeLa_S3_cervical_adenocarcinoma.ELK4.MA0076.2.damo.fa", "profile_name": "ELK4", "synonyms": [ "ELK4, ETS transcription factor", "ELK4, ETS-domain protein (SRF accessory protein 1)", "ETS domain-containing protein Elk-4", "ETS transcription factor ELK4", "SAP-1", "SAP1", "serum response factor accessory protein 1" ] } ] }, { "folder": "GSE59021.du145.ELK4", "tf_name": "ELK4", "samples": [ { "cell": null, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE59021" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0076.2", "bed_filename": "macs/DAMO/GSE59021.du145.ELK4/GSE59021.du145.ELK4.MA0076.2.damo.bed", "fasta_filename": "macs/DAMO/GSE59021.du145.ELK4/GSE59021.du145.ELK4.MA0076.2.damo.fa", "profile_name": "ELK4", "synonyms": [ "ELK4, ETS transcription factor", "ELK4, ETS-domain protein (SRF accessory protein 1)", "ETS domain-containing protein Elk-4", "ETS transcription factor ELK4", "SAP-1", "SAP1", "serum response factor accessory protein 1" ] } ] }, { "folder": "EXP034652.cortical_neurons.MEF2A", "tf_name": "MEF2A", "samples": [ { "cell": { "title": "cortical neurons" }, "biological_condition": "minus" } ], "references": [ { "identifier": "GEO:GSM1629388" }, { "identifier": "GEO:GSE66701" }, { "identifier": "PUBMED:25892301" }, { "identifier": "GTRD:EXP034652" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0052.4", "bed_filename": "macs/DAMO/EXP034652.cortical_neurons.MEF2A/EXP034652.cortical_neurons.MEF2A.MA0052.4.damo.bed", "fasta_filename": "macs/DAMO/EXP034652.cortical_neurons.MEF2A/EXP034652.cortical_neurons.MEF2A.MA0052.4.damo.fa", "profile_name": "MEF2A", "synonyms": [ "ADCAD1", "MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A)", "RSRFC4", "RSRFC9", "mef2", "myocyte enhancer factor 2A", "myocyte-specific enhancer factor 2A", "serum response factor-like protein 1" ] } ] } ] }