Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?format=api&q=MA0499.1&summary=true
{ "count": 38, "next": "https://unibind.uio.no/api/v1/datasets/?format=api&page=2&q=MA0499.1&summary=true", "previous": null, "results": [ { "folder": "EXP030919.myocytes.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "myocytes" }, "biological_condition": "10 hours in differentiating medium" } ], "references": [ { "identifier": "PUBMED:22771117" }, { "identifier": "GEO:GSE24852" }, { "identifier": "GEO:GSM611278" }, { "identifier": "GTRD:EXP030919" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP030919.myocytes.MYOD1/EXP030919.myocytes.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP030919.myocytes.MYOD1/EXP030919.myocytes.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP030920.myotube.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "myotube" }, "biological_condition": "48 hours in differentiating medium" } ], "references": [ { "identifier": "PUBMED:22771117" }, { "identifier": "GEO:GSE24852" }, { "identifier": "GEO:GSM611279" }, { "identifier": "GTRD:EXP030920" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP030920.myotube.MYOD1/EXP030920.myotube.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP030920.myotube.MYOD1/EXP030920.myotube.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP034453.P19_embryonic_carcinoma.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "P19 (embryonic carcinoma)" }, "biological_condition": "MyoD transduction" } ], "references": [ { "identifier": "GEO:GSM1575842" }, { "identifier": "GEO:GSE64626" }, { "identifier": "PUBMED:25801030" }, { "identifier": "GTRD:EXP034453" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP034453.P19_embryonic_carcinoma.MYOD1/EXP034453.P19_embryonic_carcinoma.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP034453.P19_embryonic_carcinoma.MYOD1/EXP034453.P19_embryonic_carcinoma.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP034454.P19_embryonic_carcinoma.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "P19 (embryonic carcinoma)" }, "biological_condition": "MyoD transduction" } ], "references": [ { "identifier": "PUBMED:25801030" }, { "identifier": "GEO:GSE64626" }, { "identifier": "GEO:GSM1575843" }, { "identifier": "GTRD:EXP034454" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP034454.P19_embryonic_carcinoma.MYOD1/EXP034454.P19_embryonic_carcinoma.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP034454.P19_embryonic_carcinoma.MYOD1/EXP034454.P19_embryonic_carcinoma.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP036397.C2C12_myoblasts.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "C2C12 (myoblasts)" }, "biological_condition": "day3 of differentiation" } ], "references": [ { "identifier": "GEO:GSE80812" }, { "identifier": "PUBMED:27743478" }, { "identifier": "GEO:GSM2137970" }, { "identifier": "GTRD:EXP036397" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP036397.C2C12_myoblasts.MYOD1/EXP036397.C2C12_myoblasts.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP036397.C2C12_myoblasts.MYOD1/EXP036397.C2C12_myoblasts.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP036398.C2C12_myoblasts.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "C2C12 (myoblasts)" }, "biological_condition": "day3 of differentiation, KLF5 KO" } ], "references": [ { "identifier": "GEO:GSM2137971" }, { "identifier": "GEO:GSE80812" }, { "identifier": "PUBMED:27743478" }, { "identifier": "GTRD:EXP036398" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP036398.C2C12_myoblasts.MYOD1/EXP036398.C2C12_myoblasts.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP036398.C2C12_myoblasts.MYOD1/EXP036398.C2C12_myoblasts.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP036965.C2C12_myoblasts.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "C2C12 (myoblasts)" }, "biological_condition": "differentiated" } ], "references": [ { "identifier": "GEO:GSM1556152" }, { "identifier": "PUBMED:28609469" }, { "identifier": "GEO:GSE63716" }, { "identifier": "GTRD:EXP036965" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP036965.C2C12_myoblasts.MYOD1/EXP036965.C2C12_myoblasts.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP036965.C2C12_myoblasts.MYOD1/EXP036965.C2C12_myoblasts.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP051556.C2C12_myoblasts.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "C2C12 (myoblasts)" }, "biological_condition": "Day: 2 of differentiation Celltype: myoblast" } ], "references": [ { "identifier": "PUBMED:29618024" }, { "identifier": "GEO:GSE69527" }, { "identifier": "GEO:GSM1702877" }, { "identifier": "GTRD:EXP051556" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP051556.C2C12_myoblasts.MYOD1/EXP051556.C2C12_myoblasts.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP051556.C2C12_myoblasts.MYOD1/EXP051556.C2C12_myoblasts.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP051558.C2C12_myoblasts.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "C2C12 (myoblasts)" }, "biological_condition": "Day: 2 of differentiation Celltype: myoblast Genotype: siRNA-mediated knockdown of Myolinc Treatment: transient siRNA transfection (10nM final concentration) was carried out using RNAiMax (Life Technologies) according to the manufacturer’s protocol " } ], "references": [ { "identifier": "GEO:GSM1702885" }, { "identifier": "GEO:GSE69527" }, { "identifier": "PUBMED:29618024" }, { "identifier": "GTRD:EXP051558" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP051558.C2C12_myoblasts.MYOD1/EXP051558.C2C12_myoblasts.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP051558.C2C12_myoblasts.MYOD1/EXP051558.C2C12_myoblasts.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] }, { "folder": "EXP052251.embryonic_stem_cells.MYOD1", "tf_name": "MYOD1", "samples": [ { "cell": { "title": "embryonic stem cells" }, "biological_condition": "Treatment: doxycycline Source: SA-tTA-MyoD Embryonic Stem Cells Strain: MC1 mouse ES cells derived from 129S6/SvEvTac " } ], "references": [ { "identifier": "GEO:GSE97712" }, { "identifier": "GEO:GSM2576038" }, { "identifier": "PUBMED:29500235" }, { "identifier": "GTRD:EXP052251" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0499.2", "bed_filename": "macs/DAMO/EXP052251.embryonic_stem_cells.MYOD1/EXP052251.embryonic_stem_cells.MYOD1.MA0499.2.damo.bed", "fasta_filename": "macs/DAMO/EXP052251.embryonic_stem_cells.MYOD1/EXP052251.embryonic_stem_cells.MYOD1.MA0499.2.damo.fa", "profile_name": "MYOD1", "synonyms": [ "MYF3", "MYOD", "MYODRIF", "PUM", "bHLHc1", "class C basic helix-loop-helix protein 1", "myf-3", "myoblast determination protein 1", "myogenic differentiation 1", "myogenic factor 3" ] } ] } ] }