Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?format=api&q=ENCODE&summary=true
{ "count": 1358, "next": "https://unibind.uio.no/api/v1/datasets/?format=api&page=2&q=ENCODE&summary=true", "previous": null, "results": [ { "folder": "ENCSR465HPZ.whole_organism_development_stage_embryonic.ABD-B", "tf_name": "ABD-B", "samples": [ { "cell": { "title": "whole organism (development stage: embryonic)" }, "biological_condition": "strain: Abd-B-GFP, genotype: w[1118]; PBac{y[+mDint2] w[+mC]=Abd-B-EGFP.S}VK00037/SM57" } ], "references": [ { "identifier": "ENCODE:ENCSR465HPZ" }, { "identifier": "GTRD:EXP046492" } ], "species": { "name": "Drosophila melanogaster" }, "datasets": [ { "jaspar_id": "MA0165.1", "bed_filename": "macs/DAMO/ENCSR465HPZ.whole_organism_development_stage_embryonic.ABD-B/ENCSR465HPZ.whole_organism_development_stage_embryonic.ABD-B.MA0165.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR465HPZ.whole_organism_development_stage_embryonic.ABD-B/ENCSR465HPZ.whole_organism_development_stage_embryonic.ABD-B.MA0165.1.damo.fa", "profile_name": "Abd-B", "synonyms": [ "9", "ABD-B", "ABDB", "Abd B", "Abd-B-PA", "Abd-B-PB", "Abd-B-PC", "Abd-B-PD", "Abd-B-PE", "Abd-B-PF", "Abd-B-PG", "Abd-B-PH", "Abd-B-PI", "Abd-B-PJ", "Abd-b", "Abd0B", "AbdB", "AbdB(CA)[[26]]", "AbdB-I", "AbdB-II", "AbdBm", "Abdb", "Abdominal B", "Abdominal-B", "AbdominalB", "Adb-B", "AdbB", "BX-C", "CG10291", "CG11648", "CG11648-PA", "CG11648-PB", "CG11648-PC", "CG11648-PD", "CG11648-PE", "CG11648-PF", "CG11648-PG", "CG11648-PH", "CG11648-PI", "CG11648-PJ", "DROABDB", "DmAbdB", "Dmel\\\\CG11648", "Dmel_CG11648", "Droabdb", "FAB", "Fab-6", "Fab-7", "Fab-8", "Fab7", "IAB 5", "IAB5", "IAB7", "IAB8", "Iab-7", "MCP", "Mc", "Mcp", "Sab", "Tab", "Uab-5[Sab]", "abd-B", "abdB", "abdominal B", "abdominal-A", "bex", "corset", "iab", "iab-5", "iab-6", "iab-7", "iab-8", "iab5", "iab6", "iab7", "iab8", "iab8.9", "iab9", "infra-abdominal 5", "infra-abdominal 6", "infra-abdominal 7", "infra-abdominal 8", "infra-abdominal 9", "infraabdominal", "infraabdominal-8.9", "l(3)89Ed", "male chauvinist pigmentation", "microcephalus", "miscadastral pigmentation", "pH189", "superabdominal", "transabdominal", "tuh-3", "twig" ] } ] }, { "folder": "EXP043645.whole_organism_development_stage_wandering_third_instar_larva.ABD-B", "tf_name": "ABD-B", "samples": [ { "cell": { "title": "whole organism (development stage: wandering third instar larva)" }, "biological_condition": "strain: Abd-B-GFP, genotype: w[1118]; PBac{y[+mDint2] w[+mC]=Abd-B-EGFP.S}VK00037/SM57" } ], "references": [ { "identifier": "GEO:GSM1209201" }, { "identifier": "GEO:GSM1217654" }, { "identifier": "GEO:GSM1209202" }, { "identifier": "GEO:GSM1217653" }, { "identifier": "ENCODE:ENCSR692UBK" }, { "identifier": "GTRD:EXP043645" } ], "species": { "name": "Drosophila melanogaster" }, "datasets": [ { "jaspar_id": "MA0165.1", "bed_filename": "macs/DAMO/EXP043645.whole_organism_development_stage_wandering_third_instar_larva.ABD-B/EXP043645.whole_organism_development_stage_wandering_third_instar_larva.ABD-B.MA0165.1.damo.bed", "fasta_filename": "macs/DAMO/EXP043645.whole_organism_development_stage_wandering_third_instar_larva.ABD-B/EXP043645.whole_organism_development_stage_wandering_third_instar_larva.ABD-B.MA0165.1.damo.fa", "profile_name": "Abd-B", "synonyms": [ "9", "ABD-B", "ABDB", "Abd B", "Abd-B-PA", "Abd-B-PB", "Abd-B-PC", "Abd-B-PD", "Abd-B-PE", "Abd-B-PF", "Abd-B-PG", "Abd-B-PH", "Abd-B-PI", "Abd-B-PJ", "Abd-b", "Abd0B", "AbdB", "AbdB(CA)[[26]]", "AbdB-I", "AbdB-II", "AbdBm", "Abdb", "Abdominal B", "Abdominal-B", "AbdominalB", "Adb-B", "AdbB", "BX-C", "CG10291", "CG11648", "CG11648-PA", "CG11648-PB", "CG11648-PC", "CG11648-PD", "CG11648-PE", "CG11648-PF", "CG11648-PG", "CG11648-PH", "CG11648-PI", "CG11648-PJ", "DROABDB", "DmAbdB", "Dmel\\\\CG11648", "Dmel_CG11648", "Droabdb", "FAB", "Fab-6", "Fab-7", "Fab-8", "Fab7", "IAB 5", "IAB5", "IAB7", "IAB8", "Iab-7", "MCP", "Mc", "Mcp", "Sab", "Tab", "Uab-5[Sab]", "abd-B", "abdB", "abdominal B", "abdominal-A", "bex", "corset", "iab", "iab-5", "iab-6", "iab-7", "iab-8", "iab5", "iab6", "iab7", "iab8", "iab8.9", "iab9", "infra-abdominal 5", "infra-abdominal 6", "infra-abdominal 7", "infra-abdominal 8", "infra-abdominal 9", "infraabdominal", "infraabdominal-8.9", "l(3)89Ed", "male chauvinist pigmentation", "microcephalus", "miscadastral pigmentation", "pH189", "superabdominal", "transabdominal", "tuh-3", "twig" ] } ] }, { "folder": "ENCSR959SWC.whole_organism_development_stage_prepupa.ACHI", "tf_name": "ACHI", "samples": [ { "cell": { "title": "whole organism (development stage: prepupa)" }, "biological_condition": "strain: achi-GFP, genotype: w[1118]; PBac{y[+mDint2] w[+mC]=achi-GFP.FTBP}VK00033, sex:mixed" } ], "references": [ { "identifier": "ENCODE:ENCSR959SWC" }, { "identifier": "GTRD:EXP044279" } ], "species": { "name": "Drosophila melanogaster" }, "datasets": [ { "jaspar_id": "MA0207.1", "bed_filename": "macs/DAMO/ENCSR959SWC.whole_organism_development_stage_prepupa.ACHI/ENCSR959SWC.whole_organism_development_stage_prepupa.ACHI.MA0207.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR959SWC.whole_organism_development_stage_prepupa.ACHI/ENCSR959SWC.whole_organism_development_stage_prepupa.ACHI.MA0207.1.damo.fa", "profile_name": "achi", "synonyms": null } ] }, { "folder": "ENCSR000EDP.HepG2_hepatoblastoma.ARID3A", "tf_name": "ARID3A", "samples": [ { "cell": { "title": "HepG2 (hepatoblastoma)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR000EDP" }, { "identifier": "GTRD:EXP010212" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0151.1", "bed_filename": "macs/DAMO/ENCSR000EDP.HepG2_hepatoblastoma.ARID3A/ENCSR000EDP.HepG2_hepatoblastoma.ARID3A.MA0151.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR000EDP.HepG2_hepatoblastoma.ARID3A/ENCSR000EDP.HepG2_hepatoblastoma.ARID3A.MA0151.1.damo.fa", "profile_name": "Arid3a", "synonyms": [ "ARID domain-containing protein 3A", "AT rich interactive domain 3A (BRIGHT-like)", "AT rich interactive domain 3A (Bright like)", "AT-rich interactive domain-containing protein 3A", "B-cell regulator of IgH transcription", "Bright", "Dri1", "Dril1", "dead ringer homolog 1", "dead ringer-like protein 1" ] } ] }, { "folder": "ENCSR000EFY.K562_myelogenous_leukemia.ARID3A", "tf_name": "ARID3A", "samples": [ { "cell": { "title": "K562 (myelogenous leukemia)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR000EFY" }, { "identifier": "GTRD:EXP010518" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0151.1", "bed_filename": "macs/DAMO/ENCSR000EFY.K562_myelogenous_leukemia.ARID3A/ENCSR000EFY.K562_myelogenous_leukemia.ARID3A.MA0151.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR000EFY.K562_myelogenous_leukemia.ARID3A/ENCSR000EFY.K562_myelogenous_leukemia.ARID3A.MA0151.1.damo.fa", "profile_name": "Arid3a", "synonyms": [ "ARID domain-containing protein 3A", "AT rich interactive domain 3A (BRIGHT-like)", "AT rich interactive domain 3A (Bright like)", "AT-rich interactive domain-containing protein 3A", "B-cell regulator of IgH transcription", "Bright", "Dri1", "Dril1", "dead ringer homolog 1", "dead ringer-like protein 1" ] } ] }, { "folder": "ENCSR725LYT.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A", "tf_name": "ARID3A", "samples": [ { "cell": { "title": "GM12878 (female B-cells lymphoblastoid cell line)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR725LYT" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0151.1", "bed_filename": "macs/DAMO/ENCSR725LYT.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A/ENCSR725LYT.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A.MA0151.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR725LYT.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A/ENCSR725LYT.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A.MA0151.1.damo.fa", "profile_name": "Arid3a", "synonyms": [ "ARID domain-containing protein 3A", "AT rich interactive domain 3A (BRIGHT-like)", "AT rich interactive domain 3A (Bright like)", "AT-rich interactive domain-containing protein 3A", "B-cell regulator of IgH transcription", "Bright", "Dri1", "Dril1", "dead ringer homolog 1", "dead ringer-like protein 1" ] } ] }, { "folder": "ENCSR778UBR.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A", "tf_name": "ARID3A", "samples": [ { "cell": { "title": "GM12878 (female B-cells lymphoblastoid cell line)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR778UBR" }, { "identifier": "GTRD:EXP039839" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0151.1", "bed_filename": "macs/DAMO/ENCSR778UBR.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A/ENCSR778UBR.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A.MA0151.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR778UBR.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A/ENCSR778UBR.GM12878_female_B-cells_lymphoblastoid_cell_line.ARID3A.MA0151.1.damo.fa", "profile_name": "Arid3a", "synonyms": [ "ARID domain-containing protein 3A", "AT rich interactive domain 3A (BRIGHT-like)", "AT rich interactive domain 3A (Bright like)", "AT-rich interactive domain-containing protein 3A", "B-cell regulator of IgH transcription", "Bright", "Dri1", "Dril1", "dead ringer homolog 1", "dead ringer-like protein 1" ] } ] }, { "folder": "EXP040176.MCF7_Invasive_ductal_breast_carcinoma.ARID3A", "tf_name": "ARID3A", "samples": [ { "cell": { "title": "MCF7 (Invasive ductal breast carcinoma)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR231ENE" }, { "identifier": "GEO:GSE91595" }, { "identifier": "GTRD:EXP040176" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0151.1", "bed_filename": "macs/DAMO/EXP040176.MCF7_Invasive_ductal_breast_carcinoma.ARID3A/EXP040176.MCF7_Invasive_ductal_breast_carcinoma.ARID3A.MA0151.1.damo.bed", "fasta_filename": "macs/DAMO/EXP040176.MCF7_Invasive_ductal_breast_carcinoma.ARID3A/EXP040176.MCF7_Invasive_ductal_breast_carcinoma.ARID3A.MA0151.1.damo.fa", "profile_name": "Arid3a", "synonyms": [ "ARID domain-containing protein 3A", "AT rich interactive domain 3A (BRIGHT-like)", "AT rich interactive domain 3A (Bright like)", "AT-rich interactive domain-containing protein 3A", "B-cell regulator of IgH transcription", "Bright", "Dri1", "Dril1", "dead ringer homolog 1", "dead ringer-like protein 1" ] } ] }, { "folder": "ENCSR155KHM.K562_myelogenous_leukemia.ARNT", "tf_name": "ARNT", "samples": [ { "cell": { "title": "K562 (myelogenous leukemia)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR155KHM" }, { "identifier": "GTRD:EXP040098" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0004.1", "bed_filename": "macs/DAMO/ENCSR155KHM.K562_myelogenous_leukemia.ARNT/ENCSR155KHM.K562_myelogenous_leukemia.ARNT.MA0004.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR155KHM.K562_myelogenous_leukemia.ARNT/ENCSR155KHM.K562_myelogenous_leukemia.ARNT.MA0004.1.damo.fa", "profile_name": "Arnt", "synonyms": [ "D3Ertd557e", "Drnt", "ESTM42", "HIF-1-beta", "HIF1-beta", "Hif1b", "W08714", "aryl hydrocarbon receptor nuclear translocator", "bHLHe2", "dioxin receptor, nuclear translocator", "hypoxia-inducible factor 1-beta", "mKIAA4051" ] } ] }, { "folder": "ENCSR029IBC.HepG2_hepatoblastoma.ARNT", "tf_name": "ARNT", "samples": [ { "cell": { "title": "HepG2 (hepatoblastoma)" }, "biological_condition": "" } ], "references": [ { "identifier": "ENCODE:ENCSR029IBC" }, { "identifier": "GTRD:EXP039327" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0004.1", "bed_filename": "macs/DAMO/ENCSR029IBC.HepG2_hepatoblastoma.ARNT/ENCSR029IBC.HepG2_hepatoblastoma.ARNT.MA0004.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR029IBC.HepG2_hepatoblastoma.ARNT/ENCSR029IBC.HepG2_hepatoblastoma.ARNT.MA0004.1.damo.fa", "profile_name": "Arnt", "synonyms": [ "D3Ertd557e", "Drnt", "ESTM42", "HIF-1-beta", "HIF1-beta", "Hif1b", "W08714", "aryl hydrocarbon receptor nuclear translocator", "bHLHe2", "dioxin receptor, nuclear translocator", "hypoxia-inducible factor 1-beta", "mKIAA4051" ] }, { "jaspar_id": "MA0006.1", "bed_filename": "macs/DAMO/ENCSR029IBC.HepG2_hepatoblastoma.ARNT/ENCSR029IBC.HepG2_hepatoblastoma.ARNT.MA0006.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR029IBC.HepG2_hepatoblastoma.ARNT/ENCSR029IBC.HepG2_hepatoblastoma.ARNT.MA0006.1.damo.fa", "profile_name": "Ahr::Arnt", "synonyms": [ "Ah", "Ahh", "Ahre", "D3Ertd557e", "Drnt", "ESTM42", "HIF-1-beta", "HIF1-beta", "Hif1b", "In", "W08714", "ah receptor", "aryl hydrocarbon receptor", "aryl hydrocarbon receptor nuclear translocator", "aryl-hydrocarbon receptor", "bHLHe2", "bHLHe76", "dioxin receptor", "dioxin receptor, nuclear translocator", "hypoxia-inducible factor 1-beta", "mKIAA4051" ] }, { "jaspar_id": "MA0259.1", "bed_filename": "macs/DAMO/ENCSR029IBC.HepG2_hepatoblastoma.ARNT/ENCSR029IBC.HepG2_hepatoblastoma.ARNT.MA0259.1.damo.bed", "fasta_filename": "macs/DAMO/ENCSR029IBC.HepG2_hepatoblastoma.ARNT/ENCSR029IBC.HepG2_hepatoblastoma.ARNT.MA0259.1.damo.fa", "profile_name": "ARNT::HIF1A", "synonyms": [ "ARNT interacting protein", "HIF-1-alpha", "HIF-1-beta", "HIF-1A", "HIF-1alpha", "HIF-1beta", "HIF1", "HIF1-ALPHA", "HIF1-beta", "HIF1B", "HIF1BETA", "MOP1", "PAS domain-containing protein 8", "PASD8", "TANGO", "aryl hydrocarbon receptor nuclear translocator", "bHLHe2", "bHLHe78", "basic-helix-loop-helix-PAS protein MOP1", "class E basic helix-loop-helix protein 2", "class E basic helix-loop-helix protein 78", "dioxin receptor, nuclear translocator", "hypoxia inducible factor 1 alpha subunit", "hypoxia inducible factor 1 subunit alpha", "hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)", "hypoxia-inducible factor 1, beta subunit", "hypoxia-inducible factor 1-alpha", "hypoxia-inducible factor1alpha", "member of PAS protein 1", "member of PAS superfamily 1" ] } ] } ] }