Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&q=&species=10116&summary=true
{ "count": 41, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=2&q=&species=10116&summary=true", "previous": null, "results": [ { "folder": "EXP031201.Schwann_cells.EGR2", "tf_name": "EGR2", "samples": [ { "cell": { "title": "Schwann cells" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM862399" }, { "identifier": "PUBMED:22492709" }, { "identifier": "GEO:GSE35132" }, { "identifier": "GEO:GSM862397" }, { "identifier": "GTRD:EXP031201" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0472.2", "bed_filename": "macs/DAMO/EXP031201.Schwann_cells.EGR2/EXP031201.Schwann_cells.EGR2.MA0472.2.damo.bed", "fasta_filename": "macs/DAMO/EXP031201.Schwann_cells.EGR2/EXP031201.Schwann_cells.EGR2.MA0472.2.damo.fa", "profile_name": "EGR2", "synonyms": [ "AT591", "CHN1", "CMT1D", "CMT4E", "E3 SUMO-protein ligase EGR2", "E3 SUMO-protein transferase ERG2", "KROX-20, Drosophila, homolog (early growth response-2)", "KROX20", "early growth response 2", "early growth response protein 2", "zinc finger protein Krox-20" ] } ] }, { "folder": "EXP032380.kidney.HNF4A", "tf_name": "HNF4A", "samples": [ { "cell": { "title": "kidney" }, "biological_condition": "E20" } ], "references": [ { "identifier": "GEO:GSE50815" }, { "identifier": "GEO:GSM1230266" }, { "identifier": "GTRD:EXP032380" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0114.4", "bed_filename": "macs/DAMO/EXP032380.kidney.HNF4A/EXP032380.kidney.HNF4A.MA0114.4.damo.bed", "fasta_filename": "macs/DAMO/EXP032380.kidney.HNF4A/EXP032380.kidney.HNF4A.MA0114.4.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] }, { "jaspar_id": "MA1494.1", "bed_filename": "macs/DAMO/EXP032380.kidney.HNF4A/EXP032380.kidney.HNF4A.MA1494.1.damo.bed", "fasta_filename": "macs/DAMO/EXP032380.kidney.HNF4A/EXP032380.kidney.HNF4A.MA1494.1.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] } ] }, { "folder": "EXP032381.kidney.HNF4A", "tf_name": "HNF4A", "samples": [ { "cell": { "title": "kidney" }, "biological_condition": "P13" } ], "references": [ { "identifier": "GEO:GSE50815" }, { "identifier": "GEO:GSM1230268" }, { "identifier": "GTRD:EXP032381" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0114.4", "bed_filename": "macs/DAMO/EXP032381.kidney.HNF4A/EXP032381.kidney.HNF4A.MA0114.4.damo.bed", "fasta_filename": "macs/DAMO/EXP032381.kidney.HNF4A/EXP032381.kidney.HNF4A.MA0114.4.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] }, { "jaspar_id": "MA1494.1", "bed_filename": "macs/DAMO/EXP032381.kidney.HNF4A/EXP032381.kidney.HNF4A.MA1494.1.damo.bed", "fasta_filename": "macs/DAMO/EXP032381.kidney.HNF4A/EXP032381.kidney.HNF4A.MA1494.1.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] } ] }, { "folder": "EXP032382.kidney.HNF4A", "tf_name": "HNF4A", "samples": [ { "cell": { "title": "kidney" }, "biological_condition": "Adult" } ], "references": [ { "identifier": "GEO:GSM1230270" }, { "identifier": "GEO:GSE50815" }, { "identifier": "GTRD:EXP032382" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA1494.1", "bed_filename": "macs/DAMO/EXP032382.kidney.HNF4A/EXP032382.kidney.HNF4A.MA1494.1.damo.bed", "fasta_filename": "macs/DAMO/EXP032382.kidney.HNF4A/EXP032382.kidney.HNF4A.MA1494.1.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] } ] }, { "folder": "EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A", "tf_name": "HNF4A", "samples": [ { "cell": { "title": "H4-II-E (hepatocellular carcinoma)" }, "biological_condition": "siRNA - Scrambled" } ], "references": [ { "identifier": "GEO:GSE53862" }, { "identifier": "PUBMED:25414334" }, { "identifier": "GEO:GSM1302279" }, { "identifier": "GTRD:EXP033400" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0114.4", "bed_filename": "macs/DAMO/EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A/EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A.MA0114.4.damo.bed", "fasta_filename": "macs/DAMO/EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A/EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A.MA0114.4.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] }, { "jaspar_id": "MA1494.1", "bed_filename": "macs/DAMO/EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A/EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A.MA1494.1.damo.bed", "fasta_filename": "macs/DAMO/EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A/EXP033400.H4-II-E_hepatocellular_carcinoma.HNF4A.MA1494.1.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] } ] }, { "folder": "EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A", "tf_name": "HNF4A", "samples": [ { "cell": { "title": "H4-II-E (hepatocellular carcinoma)" }, "biological_condition": "siRNA - Tcf7l2" } ], "references": [ { "identifier": "PUBMED:25414334" }, { "identifier": "GEO:GSM1302280" }, { "identifier": "GEO:GSE53862" }, { "identifier": "GTRD:EXP033401" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0114.4", "bed_filename": "macs/DAMO/EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A/EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A.MA0114.4.damo.bed", "fasta_filename": "macs/DAMO/EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A/EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A.MA0114.4.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] }, { "jaspar_id": "MA1494.1", "bed_filename": "macs/DAMO/EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A/EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A.MA1494.1.damo.bed", "fasta_filename": "macs/DAMO/EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A/EXP033401.H4-II-E_hepatocellular_carcinoma.HNF4A.MA1494.1.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] } ] }, { "folder": "EXP037923.liver.HNF4A", "tf_name": "HNF4A", "samples": [ { "cell": { "title": "liver" }, "biological_condition": "sham surgery, 14 days after surgery" } ], "references": [ { "identifier": "GEO:GSM2339392" }, { "identifier": "GEO:GSE87730" }, { "identifier": "PUBMED:28440344" }, { "identifier": "GTRD:EXP037923" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0114.4", "bed_filename": "macs/DAMO/EXP037923.liver.HNF4A/EXP037923.liver.HNF4A.MA0114.4.damo.bed", "fasta_filename": "macs/DAMO/EXP037923.liver.HNF4A/EXP037923.liver.HNF4A.MA0114.4.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] }, { "jaspar_id": "MA1494.1", "bed_filename": "macs/DAMO/EXP037923.liver.HNF4A/EXP037923.liver.HNF4A.MA1494.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037923.liver.HNF4A/EXP037923.liver.HNF4A.MA1494.1.damo.fa", "profile_name": "HNF4A", "synonyms": [ "FRTS4", "HNF4", "HNF4a7", "HNF4a8", "HNF4a9", "HNF4alpha", "HNF4alpha10/11/12", "MODY", "MODY1", "NR2A1", "NR2A21", "TCF", "TCF-14", "TCF14", "hepatic nuclear factor 4 alpha", "hepatocyte nuclear factor 4 alpha", "hepatocyte nuclear factor 4-alpha", "nuclear receptor subfamily 2 group A member 1", "transcription factor 14", "transcription factor HNF-4" ] } ] }, { "folder": "EXP037912.liver.JUN", "tf_name": "JUN", "samples": [ { "cell": { "title": "liver" }, "biological_condition": "ligated bile duct, 14 days after surgery" } ], "references": [ { "identifier": "GEO:GSE87730" }, { "identifier": "PUBMED:28440344" }, { "identifier": "GEO:GSM2339381" }, { "identifier": "GTRD:EXP037912" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0099.3", "bed_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA0099.3.damo.bed", "fasta_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA0099.3.damo.fa", "profile_name": "FOS::JUN", "synonyms": [ "AP-1", "AP-1", "AP1", "C-FOS", "FBJ murine osteosarcoma viral (v-fos) oncogene homolog (oncogene FOS)", "FBJ murine osteosarcoma viral oncogene homolog", "Fos proto-oncogene, AP-1 trancription factor subunit", "Fos proto-oncogene, AP-1 transcription factor subunit", "G0/G1 switch regulatory protein 7", "Jun activation domain binding protein", "Jun proto-oncogene, AP-1 transcription factor subunit", "activator protein 1", "activator protein 1", "c-Jun", "cJUN", "cellular oncogene c-fos", "enhancer-binding protein AP1", "jun oncogene", "p39", "p55", "proto-oncogene c-Fos", "proto-oncogene c-Jun", "proto-oncogene cJun", "transcription factor AP-1", "v-jun avian sarcoma virus 17 oncogene homolog", "v-jun sarcoma virus 17 oncogene homolog" ] }, { "jaspar_id": "MA0462.2", "bed_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA0462.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA0462.2.damo.fa", "profile_name": "BATF::JUN", "synonyms": [ "AP-1", "AP1", "B-ATF", "B-cell-activating transcription factor", "BATF1", "Jun activation domain binding protein", "Jun proto-oncogene, AP-1 transcription factor subunit", "SF-HT-activated gene 2 protein", "SFA-2", "SFA2", "activating transcription factor B", "activator protein 1", "basic leucine zipper ATF-like transcription factor", "basic leucine zipper transcription factor, ATF-like", "basic leucine zipper transcriptional factor ATF-like", "c-Jun", "cJUN", "enhancer-binding protein AP1", "jun oncogene", "p39", "proto-oncogene c-Jun", "proto-oncogene cJun", "transcription factor AP-1", "v-jun avian sarcoma virus 17 oncogene homolog", "v-jun sarcoma virus 17 oncogene homolog" ] }, { "jaspar_id": "MA0488.1", "bed_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA0488.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA0488.1.damo.fa", "profile_name": "JUN", "synonyms": [ "AP-1", "AP1", "Jun activation domain binding protein", "Jun proto-oncogene, AP-1 transcription factor subunit", "activator protein 1", "c-Jun", "cJUN", "enhancer-binding protein AP1", "jun oncogene", "p39", "proto-oncogene c-Jun", "proto-oncogene cJun", "transcription factor AP-1", "v-jun avian sarcoma virus 17 oncogene homolog", "v-jun sarcoma virus 17 oncogene homolog" ] }, { "jaspar_id": "MA0489.1", "bed_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA0489.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA0489.1.damo.fa", "profile_name": "JUN", "synonyms": [ "AP-1", "AP1", "Jun activation domain binding protein", "Jun proto-oncogene, AP-1 transcription factor subunit", "activator protein 1", "c-Jun", "cJUN", "enhancer-binding protein AP1", "jun oncogene", "p39", "proto-oncogene c-Jun", "proto-oncogene cJun", "transcription factor AP-1", "v-jun avian sarcoma virus 17 oncogene homolog", "v-jun sarcoma virus 17 oncogene homolog" ] }, { "jaspar_id": "MA1127.1", "bed_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA1127.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA1127.1.damo.fa", "profile_name": "FOSB::JUN", "synonyms": [ "AP-1", "AP-1", "AP1", "FBJ murine osteosarcoma viral oncogene homolog B", "FosB proto-oncogene, AP-1 trancription factor subunit", "FosB proto-oncogene, AP-1 transcription factor subunit", "G0/G1 switch regulatory protein 3", "G0S3", "GOS3", "GOSB", "Jun activation domain binding protein", "Jun proto-oncogene, AP-1 transcription factor subunit", "activator protein 1", "activator protein 1", "c-Jun", "cJUN", "enhancer-binding protein AP1", "jun oncogene", "p39", "protein fosB", "proto-oncogene c-Jun", "proto-oncogene cJun", "transcription factor AP-1", "v-jun avian sarcoma virus 17 oncogene homolog", "v-jun sarcoma virus 17 oncogene homolog" ] }, { "jaspar_id": "MA1128.1", "bed_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA1128.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA1128.1.damo.fa", "profile_name": "FOSL1::JUN", "synonyms": [ "AP-1", "AP1", "FOS like 1, AP-1 trancription factor subunit", "FOS like 1, AP-1 transcription factor subunit", "FOS-like antigen-1", "FRA", "FRA1", "Jun activation domain binding protein", "Jun proto-oncogene, AP-1 transcription factor subunit", "activator protein 1", "c-Jun", "cJUN", "enhancer-binding protein AP1", "fos-related antigen 1", "fra-1", "jun oncogene", "p39", "proto-oncogene c-Jun", "proto-oncogene cJun", "transcription factor AP-1", "v-jun avian sarcoma virus 17 oncogene homolog", "v-jun sarcoma virus 17 oncogene homolog" ] }, { "jaspar_id": "MA1130.1", "bed_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA1130.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA1130.1.damo.fa", "profile_name": "FOSL2::JUN", "synonyms": [ "AP-1", "AP1", "FOS like 2, AP-1 trancription factor subunit", "FOS like 2, AP-1 transcription factor subunit", "FOS like antigen 2", "FRA-2", "FRA2", "Jun activation domain binding protein", "Jun proto-oncogene, AP-1 transcription factor subunit", "activator protein 1", "c-Jun", "cJUN", "enhancer-binding protein AP1", "fos-related antigen 2", "jun oncogene", "p39", "proto-oncogene c-Jun", "proto-oncogene cJun", "transcription factor AP-1", "v-jun avian sarcoma virus 17 oncogene homolog", "v-jun sarcoma virus 17 oncogene homolog" ] }, { "jaspar_id": "MA1132.1", "bed_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA1132.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037912.liver.JUN/EXP037912.liver.JUN.MA1132.1.damo.fa", "profile_name": "JUN::JUNB", "synonyms": [ "AP-1", "AP-1", "AP1", "Jun activation domain binding protein", "Jun proto-oncogene, AP-1 transcription factor subunit", "JunB proto-oncogene, AP-1 transcription factor subunit", "activator protein 1", "activator protein 1", "c-Jun", "cJUN", "enhancer-binding protein AP1", "jun B proto-oncogene", "jun oncogene", "p39", "proto-oncogene c-Jun", "proto-oncogene cJun", "transcription factor AP-1", "transcription factor jun-B", "v-jun avian sarcoma virus 17 oncogene homolog", "v-jun sarcoma virus 17 oncogene homolog" ] } ] }, { "folder": "EXP037914.liver.JUN", "tf_name": "JUN", "samples": [ { "cell": { "title": "liver" }, "biological_condition": "ligated bile duct, 5 days after surgery" } ], "references": [ { "identifier": "GEO:GSM2339383" }, { "identifier": "GEO:GSE87730" }, { "identifier": "PUBMED:28440344" }, { "identifier": "GTRD:EXP037914" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0099.3", "bed_filename": 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