Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&page=4&q=ESC&summary=true
{ "count": 51, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=5&q=ESC&summary=true", "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=3&q=ESC&summary=true", "results": [ { "folder": "EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence meristems and floral buds (5-7 weeks)" }, "biological_condition": "wild type" } ], "references": [ { "identifier": "GEO:GSE14600" }, { "identifier": "GEO:GSM364940" }, { "identifier": "PUBMED:19385720" }, { "identifier": "GTRD:EXP041203" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] } ] }, { "folder": "EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence meristems and floral buds (5-7 weeks)" }, "biological_condition": "wild type" } ], "references": [ { "identifier": "GEO:GSE14600" }, { "identifier": "PUBMED:19385720" }, { "identifier": "GEO:GSM364942" }, { "identifier": "GTRD:EXP041205" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] } ] }, { "folder": "EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence meristems and floral buds (5-7 weeks)" }, "biological_condition": "agamous mutant (ag-1)" } ], "references": [ { "identifier": "GEO:GSE14600" }, { "identifier": "PUBMED:19385720" }, { "identifier": "GEO:GSM364943" }, { "identifier": "GTRD:EXP041206" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] } ] }, { "folder": "EXP041280.inflorescence.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "4 days after DEX" } ], "references": [ { "identifier": "GEO:GSM1142624" }, { "identifier": "PUBMED:24581456" }, { "identifier": "GEO:GSE46986" }, { "identifier": "GTRD:EXP041280" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041280.inflorescence.SEP3/EXP041280.inflorescence.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041280.inflorescence.SEP3/EXP041280.inflorescence.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] } ] }, { "folder": "EXP041281.inflorescence.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "8 days after DEX" } ], "references": [ { "identifier": "GEO:GSE46986" }, { "identifier": "GEO:GSM1142625" }, { "identifier": "PUBMED:24581456" }, { "identifier": "GTRD:EXP041281" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041281.inflorescence.SEP3/EXP041281.inflorescence.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041281.inflorescence.SEP3/EXP041281.inflorescence.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] } ] }, { "folder": "EXP041285.inflorescence.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "2 days after DEX" } ], "references": [ { "identifier": "GEO:GSM1279838" }, { "identifier": "GEO:GSM1279839" }, { "identifier": "PUBMED:24581456" }, { "identifier": "GEO:GSE46986" }, { "identifier": "GTRD:EXP041285" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041285.inflorescence.SEP3/EXP041285.inflorescence.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041285.inflorescence.SEP3/EXP041285.inflorescence.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] } ] }, { "folder": "GSE29422.hESC-1_Embryonic_stem_cells.SMAD2", "tf_name": "SMAD2", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE29422" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0513.1", "bed_filename": "macs/DAMO/GSE29422.hESC-1_Embryonic_stem_cells.SMAD2/GSE29422.hESC-1_Embryonic_stem_cells.SMAD2.MA0513.1.damo.bed", "fasta_filename": "macs/DAMO/GSE29422.hESC-1_Embryonic_stem_cells.SMAD2/GSE29422.hESC-1_Embryonic_stem_cells.SMAD2.MA0513.1.damo.fa", "profile_name": "SMAD2::SMAD3::SMAD4", "synonyms": [ "CHTD8", "DPC4", "HSPC193", "HsT17436", "JIP", "JV15-2", "JV18", "JV18-1", "LDS1C", "LDS3", "LDS6", "MAD homolog 2", "MAD homolog 3", "MAD homolog 4", "MAD, mothers against decapentaplegic homolog 3", "MADH2", "MADH3", "MADH4", "MADR2", "MYHRS", "SMA- and MAD-related protein 3", "SMAD family member 2", "SMAD family member 3", "SMAD family member 4", "SMAD, mothers against DPP homolog 2", "SMAD, mothers against DPP homolog 3", "SMAD, mothers against DPP homolog 4", "Sma- and Mad-related protein 2", "deleted in pancreatic carcinoma locus 4", "deletion target in pancreatic carcinoma 4", "hMAD-2", "hMAD-3", "hSMAD2", "hSMAD3", "mad homolog JV15-2", "mad protein homolog", "mad3", "mother against DPP homolog 2", "mothers against DPP homolog 3", "mothers against decapentaplegic homolog 2", "mothers against decapentaplegic homolog 3", "mothers against decapentaplegic homolog 4", "mothers against decapentaplegic, Drosophila, homolog of, 4" ] } ] }, { "folder": "GSE29422.hESC-1_Embryonic_stem_cells.SMAD4", "tf_name": "SMAD4", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE29422" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA1153.1", "bed_filename": "macs/DAMO/GSE29422.hESC-1_Embryonic_stem_cells.SMAD4/GSE29422.hESC-1_Embryonic_stem_cells.SMAD4.MA1153.1.damo.bed", "fasta_filename": "macs/DAMO/GSE29422.hESC-1_Embryonic_stem_cells.SMAD4/GSE29422.hESC-1_Embryonic_stem_cells.SMAD4.MA1153.1.damo.fa", "profile_name": "Smad4", "synonyms": [ "AW743858", "D18Wsu70e", "DPC4", "MAD homolog 4", "Madh4", "SMAD family member 4", "deletion target in pancreatic carcinoma 4 homolog", "mothers against DPP homolog 4", "mothers against decapentaplegic homolog 4" ] } ] }, { "folder": "GSE18292.hESC-1_Embryonic_stem_cells.SOX2", "tf_name": "SOX2", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE18292" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0143.4", "bed_filename": "macs/DAMO/GSE18292.hESC-1_Embryonic_stem_cells.SOX2/GSE18292.hESC-1_Embryonic_stem_cells.SOX2.MA0143.4.damo.bed", "fasta_filename": "macs/DAMO/GSE18292.hESC-1_Embryonic_stem_cells.SOX2/GSE18292.hESC-1_Embryonic_stem_cells.SOX2.MA0143.4.damo.fa", "profile_name": "SOX2", "synonyms": [ "ANOP3", "MCOPS3", "SRY (sex determining region Y)-box 2", "SRY-box 2", "SRY-box transcription factor 2", "SRY-related HMG-box gene 2", "sex determining region Y-box 2", "transcription factor SOX-2", "transcription factor SOX2" ] } ] }, { "folder": "GSE69479.hESC-1_Embryonic_stem_cells.SOX2", "tf_name": "SOX2", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE69479" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0143.4", "bed_filename": "macs/DAMO/GSE69479.hESC-1_Embryonic_stem_cells.SOX2/GSE69479.hESC-1_Embryonic_stem_cells.SOX2.MA0143.4.damo.bed", "fasta_filename": "macs/DAMO/GSE69479.hESC-1_Embryonic_stem_cells.SOX2/GSE69479.hESC-1_Embryonic_stem_cells.SOX2.MA0143.4.damo.fa", "profile_name": "SOX2", "synonyms": [ "ANOP3", "MCOPS3", "SRY (sex determining region Y)-box 2", "SRY-box 2", "SRY-box transcription factor 2", "SRY-related HMG-box gene 2", "sex determining region Y-box 2", "transcription factor SOX-2", "transcription factor SOX2" ] } ] } ] }