Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&page=3&q=ESC&summary=true
{ "count": 51, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=4&q=ESC&summary=true", "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=2&q=ESC&summary=true", "results": [ { "folder": "GSE64758.hESC-1_Embryonic_stem_cells_WNT3A.LEF1", "tf_name": "LEF1", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "WNT3A" } ], "references": [ { "identifier": "GEO:GSE64758" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0768.1", "bed_filename": "macs/DAMO/GSE64758.hESC-1_Embryonic_stem_cells_WNT3A.LEF1/GSE64758.hESC-1_Embryonic_stem_cells_WNT3A.LEF1.MA0768.1.damo.bed", "fasta_filename": "macs/DAMO/GSE64758.hESC-1_Embryonic_stem_cells_WNT3A.LEF1/GSE64758.hESC-1_Embryonic_stem_cells_WNT3A.LEF1.MA0768.1.damo.fa", "profile_name": "LEF1", "synonyms": [ "LEF-1", "T cell-specific transcription factor 1-alpha", "TCF1-alpha", "TCF10", "TCF1ALPHA", "TCF7L3", "lymphoid enhancer binding factor 1", "lymphoid enhancer-binding factor 1" ] } ] }, { "folder": "EXP041523.inflorescence.LFY", "tf_name": "LFY", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "treatment with a solution containing 10 μM dexamethasone (Sigma-Aldrich), 0.01% (v/v) ethanol, and 0.015% (v/v) Silwet L-77 (De Sangosse)." } ], "references": [ { "identifier": "GEO:GSE96806" }, { "identifier": "PUBMED:28385730" }, { "identifier": "GEO:GSM2544348" }, { "identifier": "GTRD:EXP041523" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0590.1", "bed_filename": "macs/DAMO/EXP041523.inflorescence.LFY/EXP041523.inflorescence.LFY.MA0590.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041523.inflorescence.LFY/EXP041523.inflorescence.LFY.MA0590.1.damo.fa", "profile_name": "LFY", "synonyms": [ "AT5G61850", "LEAFY", "LEAFY 3", "LFY3", "MAC9.13", "MAC9_13", "floral meristem identity control protein LEAFY (LFY)" ] } ] }, { "folder": "GSE58685.hESC-1_Embryonic_stem_cells.PDX1", "tf_name": "PDX1", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE58685" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0132.2", "bed_filename": "macs/DAMO/GSE58685.hESC-1_Embryonic_stem_cells.PDX1/GSE58685.hESC-1_Embryonic_stem_cells.PDX1.MA0132.2.damo.bed", "fasta_filename": "macs/DAMO/GSE58685.hESC-1_Embryonic_stem_cells.PDX1/GSE58685.hESC-1_Embryonic_stem_cells.PDX1.MA0132.2.damo.fa", "profile_name": "PDX1", "synonyms": [ "GSF", "IDX-1", "IPF-1", "IPF1", "IUF-1", "IUF1", "MODY4", "PAGEN1", "PDX-1", "STF-1", "glucose-sensitive factor", "insulin promoter factor 1, homeodomain transcription factor", "insulin upstream factor 1", "islet/duodenum homeobox-1", "pancreas/duodenum homeobox protein 1", "pancreatic and duodenal homeobox 1", "pancreatic-duodenal homeobox factor 1", "somatostatin transcription factor 1", "somatostatin-transactivating factor 1" ] } ] }, { "folder": "GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.POU5F1", "tf_name": "POU5F1", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "NAIVE" } ], "references": [ { "identifier": "GEO:GSE69646" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA1115.1", "bed_filename": "macs/DAMO/GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.POU5F1/GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.POU5F1.MA1115.1.damo.bed", "fasta_filename": "macs/DAMO/GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.POU5F1/GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.POU5F1.MA1115.1.damo.fa", "profile_name": "POU5F1", "synonyms": [ "OCT3", "OCT4", "OTF-3", "OTF3", "OTF4", "Oct-3", "Oct-4", "POU class 5 homeobox 1", "POU domain transcription factor OCT4", "POU domain, class 5, transcription factor 1", "POU-type homeodomain-containing DNA-binding protein", "octamer-binding protein 3", "octamer-binding protein 4", "octamer-binding transcription factor 3" ] } ] }, { "folder": "GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.POU5F1", "tf_name": "POU5F1", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "PRIMED" } ], "references": [ { "identifier": "GEO:GSE69646" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA1115.1", "bed_filename": "macs/DAMO/GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.POU5F1/GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.POU5F1.MA1115.1.damo.bed", "fasta_filename": "macs/DAMO/GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.POU5F1/GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.POU5F1.MA1115.1.damo.fa", "profile_name": "POU5F1", "synonyms": [ "OCT3", "OCT4", "OTF-3", "OTF3", "OTF4", "Oct-3", "Oct-4", "POU class 5 homeobox 1", "POU domain transcription factor OCT4", "POU domain, class 5, transcription factor 1", "POU-type homeodomain-containing DNA-binding protein", "octamer-binding protein 3", "octamer-binding protein 4", "octamer-binding transcription factor 3" ] } ] }, { "folder": "EXP038999.embryonic_stem_cells.PRDM15", "tf_name": "PRDM15", "samples": [ { "cell": { "title": "embryonic stem cells" }, "biological_condition": "ESCs medium (+Lif)" } ], "references": [ { "identifier": "PUBMED:28740264" }, { "identifier": "GEO:GSE73692" }, { "identifier": "GEO:GSM1900990" }, { "identifier": "GTRD:EXP038999" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA1616.1", "bed_filename": "macs/DAMO/EXP038999.embryonic_stem_cells.PRDM15/EXP038999.embryonic_stem_cells.PRDM15.MA1616.1.damo.bed", "fasta_filename": "macs/DAMO/EXP038999.embryonic_stem_cells.PRDM15/EXP038999.embryonic_stem_cells.PRDM15.MA1616.1.damo.fa", "profile_name": "Prdm15", "synonyms": [ "C21orf83", "E130018M06Rik", "ORF62", "PR domain containing 15", "PR domain zinc finger protein 15", "PR domain-containing protein 15", "Zfp298", "zinc finger protein 298" ] } ] }, { "folder": "EXP039000.embryonic_stem_cells.PRDM15", "tf_name": "PRDM15", "samples": [ { "cell": { "title": "embryonic stem cells" }, "biological_condition": "ESCs medium (+Lif) and 2i; Prdm15KO" } ], "references": [ { "identifier": "GEO:GSM2587045" }, { "identifier": "PUBMED:28740264" }, { "identifier": "GEO:GSE73692" }, { "identifier": "GEO:GSM2587044" }, { "identifier": "GTRD:EXP039000" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA1616.1", "bed_filename": "macs/DAMO/EXP039000.embryonic_stem_cells.PRDM15/EXP039000.embryonic_stem_cells.PRDM15.MA1616.1.damo.bed", "fasta_filename": "macs/DAMO/EXP039000.embryonic_stem_cells.PRDM15/EXP039000.embryonic_stem_cells.PRDM15.MA1616.1.damo.fa", "profile_name": "Prdm15", "synonyms": [ "C21orf83", "E130018M06Rik", "ORF62", "PR domain containing 15", "PR domain zinc finger protein 15", "PR domain-containing protein 15", "Zfp298", "zinc finger protein 298" ] } ] }, { "folder": "EXP037001.hippocampal_neural_stem_cells.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "hippocampal neural stem cells" }, "biological_condition": "quiescence" } ], "references": [ { "identifier": "PUBMED:27819263" }, { "identifier": "GEO:GSM1816596" }, { "identifier": "GEO:GSE70695" }, { "identifier": "GTRD:EXP037001" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037001.hippocampal_neural_stem_cells.REST/EXP037001.hippocampal_neural_stem_cells.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037001.hippocampal_neural_stem_cells.REST/EXP037001.hippocampal_neural_stem_cells.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] } ] }, { "folder": "EXP037002.hippocampal_neural_stem_cells.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "hippocampal neural stem cells" }, "biological_condition": "quiescence" } ], "references": [ { "identifier": "GEO:GSM1816597" }, { "identifier": "PUBMED:27819263" }, { "identifier": "GEO:GSE70695" }, { "identifier": "GTRD:EXP037002" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037002.hippocampal_neural_stem_cells.REST/EXP037002.hippocampal_neural_stem_cells.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037002.hippocampal_neural_stem_cells.REST/EXP037002.hippocampal_neural_stem_cells.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] } ] }, { "folder": "EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence meristems and floral buds (5-7 weeks)" }, "biological_condition": "wild type" } ], "references": [ { "identifier": "PUBMED:19385720" }, { "identifier": "GEO:GSE14600" }, { "identifier": "GEO:GSM364939" }, { "identifier": "GTRD:EXP041202" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] } ] } ] }