Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&page=3&q=&species=4932&summary=true
{ "count": 29, "next": null, "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=2&q=&species=4932&summary=true", "results": [ { "folder": "EXP042257.W303a_Strain.NDT80", "tf_name": "NDT80", "samples": [ { "cell": { "title": "W303a Strain" }, "biological_condition": "yIN218 strain; Pichia pastoris Ndt80" } ], "references": [ { "identifier": "GEO:GSM2410146" }, { "identifier": "PUBMED:28327289" }, { "identifier": "GEO:GSE90660" }, { "identifier": "GEO:GSM2410147" }, { "identifier": "GTRD:EXP042257" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0343.1", "bed_filename": "macs/DAMO/EXP042257.W303a_Strain.NDT80/EXP042257.W303a_Strain.NDT80.MA0343.1.damo.bed", "fasta_filename": "macs/DAMO/EXP042257.W303a_Strain.NDT80/EXP042257.W303a_Strain.NDT80.MA0343.1.damo.fa", "profile_name": "NDT80", "synonyms": [ "YHR124W", "transcription factor NDT80" ] } ] }, { "folder": "EXP041557.S__cerevisiae_cells.PHO4", "tf_name": "PHO4", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "NoPi; W303 strain" } ], "references": [ { "identifier": "GEO:GSE29506" }, { "identifier": "GEO:GSM730517" }, { "identifier": "PUBMED:21700227" }, { "identifier": "GTRD:EXP041557" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0357.1", "bed_filename": "macs/DAMO/EXP041557.S__cerevisiae_cells.PHO4/EXP041557.S__cerevisiae_cells.PHO4.MA0357.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041557.S__cerevisiae_cells.PHO4/EXP041557.S__cerevisiae_cells.PHO4.MA0357.1.damo.fa", "profile_name": "PHO4", "synonyms": [ "YFR034C", "phosphate-sensing transcription factor PHO4" ] } ] }, { "folder": "EXP041855.S__cerevisiae_cells.RAP1", "tf_name": "RAP1", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM1509036" }, { "identifier": "GEO:GSE61596" }, { "identifier": "PUBMED:25085421" }, { "identifier": "GTRD:EXP041855" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0359.1", "bed_filename": "macs/DAMO/EXP041855.S__cerevisiae_cells.RAP1/EXP041855.S__cerevisiae_cells.RAP1.MA0359.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041855.S__cerevisiae_cells.RAP1/EXP041855.S__cerevisiae_cells.RAP1.MA0359.1.damo.fa", "profile_name": "RAP1", "synonyms": [ "DNA-binding transcription factor RAP1", "GRC4", "GRF1", "TBA1", "TUF1", "YNL216W" ] } ] }, { "folder": "EXP042143.meiotic_culture.REB1", "tf_name": "REB1", "samples": [ { "cell": { "title": "meiotic culture" }, "biological_condition": "Reb1 TAP-tagged strain" } ], "references": [ { "identifier": "GEO:GSM2143115" }, { "identifier": "GEO:GSE81112" }, { "identifier": "PUBMED:28158860" }, { "identifier": "GTRD:EXP042143" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0363.1", "bed_filename": "macs/DAMO/EXP042143.meiotic_culture.REB1/EXP042143.meiotic_culture.REB1.MA0363.1.damo.bed", "fasta_filename": "macs/DAMO/EXP042143.meiotic_culture.REB1/EXP042143.meiotic_culture.REB1.MA0363.1.damo.fa", "profile_name": "REB1", "synonyms": [ "DNA-binding protein REB1", "EBF1", "GRF2", "YBR049C" ] } ] }, { "folder": "EXP041583.S__cerevisiae_cells.SKO1", "tf_name": "SKO1", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "wild type (mock-treated by addition of YEPD)" } ], "references": [ { "identifier": "GEO:GSE38208" }, { "identifier": "GEO:GSM936794" }, { "identifier": "PUBMED:22973550" }, { "identifier": "GTRD:EXP041583" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0382.1", "bed_filename": "macs/DAMO/EXP041583.S__cerevisiae_cells.SKO1/EXP041583.S__cerevisiae_cells.SKO1.MA0382.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041583.S__cerevisiae_cells.SKO1/EXP041583.S__cerevisiae_cells.SKO1.MA0382.1.damo.fa", "profile_name": "SKO1", "synonyms": [ "ACR1", "Sko1p", "YNL167C" ] } ] }, { "folder": "EXP041622.S__cerevisiae_cells.SNT2", "tf_name": "SNT2", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "0.5 hrs after treatment with H2O2; Snt2-13Myc strain;" } ], "references": [ { "identifier": "PUBMED:23878396" }, { "identifier": "GEO:GSM1054129" }, { "identifier": "GEO:GSE42971" }, { "identifier": "GTRD:EXP041622" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0384.1", "bed_filename": "macs/DAMO/EXP041622.S__cerevisiae_cells.SNT2/EXP041622.S__cerevisiae_cells.SNT2.MA0384.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041622.S__cerevisiae_cells.SNT2/EXP041622.S__cerevisiae_cells.SNT2.MA0384.1.damo.fa", "profile_name": "SNT2", "synonyms": [ "DNA-binding E3 ubiquitin-protein ligase SNT2", "YGL131C" ] } ] }, { "folder": "EXP041806.S__cerevisiae_cells.SWI4", "tf_name": "SWI4", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "W303 (Z1256); SWI4-myc" } ], "references": [ { "identifier": "GEO:GSE60281" }, { "identifier": "GEO:GSM1470200" }, { "identifier": "PUBMED:26772747" }, { "identifier": "GTRD:EXP041806" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0401.1", "bed_filename": "macs/DAMO/EXP041806.S__cerevisiae_cells.SWI4/EXP041806.S__cerevisiae_cells.SWI4.MA0401.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041806.S__cerevisiae_cells.SWI4/EXP041806.S__cerevisiae_cells.SWI4.MA0401.1.damo.fa", "profile_name": "SWI4", "synonyms": [ "ART1", "SBF complex DNA-binding subunit SWI4", "YER111C" ] } ] }, { "folder": "EXP041807.S__cerevisiae_cells.SWI4", "tf_name": "SWI4", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "W303 (Z1256); SWI4-myc; SWI6-knockout (co-factor)" } ], "references": [ { "identifier": "GEO:GSM1470202" }, { "identifier": "GEO:GSE60281" }, { "identifier": "PUBMED:26772747" }, { "identifier": "GTRD:EXP041807" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0401.1", "bed_filename": "macs/DAMO/EXP041807.S__cerevisiae_cells.SWI4/EXP041807.S__cerevisiae_cells.SWI4.MA0401.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041807.S__cerevisiae_cells.SWI4/EXP041807.S__cerevisiae_cells.SWI4.MA0401.1.damo.fa", "profile_name": "SWI4", "synonyms": [ "ART1", "SBF complex DNA-binding subunit SWI4", "YER111C" ] } ] }, { "folder": "EXP041547.S__cerevisiae_cells.TBF1", "tf_name": "TBF1", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "W303-1A TBF1-13xMyc::HIS3" } ], "references": [ { "identifier": "PUBMED:20513435" }, { "identifier": "GEO:GSE20870" }, { "identifier": "GEO:GSM521935" }, { "identifier": "GTRD:EXP041547" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0403.1", "bed_filename": "macs/DAMO/EXP041547.S__cerevisiae_cells.TBF1/EXP041547.S__cerevisiae_cells.TBF1.MA0403.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041547.S__cerevisiae_cells.TBF1/EXP041547.S__cerevisiae_cells.TBF1.MA0403.1.damo.fa", "profile_name": "TBF1", "synonyms": [ "LPI16", "Tbf1p", "YPL128C" ] } ] } ] }