Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&page=3&q=&species=3702&summary=true
{ "count": 78, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=4&q=&species=3702&summary=true", "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=2&q=&species=3702&summary=true", "results": [ { "folder": "EXP041386.14_day_old_seedling.CCA1", "tf_name": "CCA1", "samples": [ { "cell": { "title": "14 day old seedling" }, "biological_condition": "Constant Light after entrainment in 12h:12h Light: Dark; ZT2" } ], "references": [ { "identifier": "GEO:GSM1808449" }, { "identifier": "GEO:GSM1808450" }, { "identifier": "PUBMED:26261339" }, { "identifier": "GEO:GSE70533" }, { "identifier": "GEO:GSM1808451" }, { "identifier": "GTRD:EXP041386" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0972.1", "bed_filename": "macs/DAMO/EXP041386.14_day_old_seedling.CCA1/EXP041386.14_day_old_seedling.CCA1.MA0972.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041386.14_day_old_seedling.CCA1/EXP041386.14_day_old_seedling.CCA1.MA0972.1.damo.fa", "profile_name": "CCA1", "synonyms": [ "AT2G46830", "AtCCA1", "F19D11.11", "MYB-RELATED DNA BINDING PROTEIN", "circadian clock associated 1" ] } ] }, { "folder": "EXP041387.14_day_old_seedling.CCA1", "tf_name": "CCA1", "samples": [ { "cell": { "title": "14 day old seedling" }, "biological_condition": "Diel 12h:12h Light:Dark; ZT2" } ], "references": [ { "identifier": "PUBMED:26261339" }, { "identifier": "GEO:GSM1808452" }, { "identifier": "GEO:GSM1808453" }, { "identifier": "GEO:GSE70533" }, { "identifier": "GTRD:EXP041387" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0972.1", "bed_filename": "macs/DAMO/EXP041387.14_day_old_seedling.CCA1/EXP041387.14_day_old_seedling.CCA1.MA0972.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041387.14_day_old_seedling.CCA1/EXP041387.14_day_old_seedling.CCA1.MA0972.1.damo.fa", "profile_name": "CCA1", "synonyms": [ "AT2G46830", "AtCCA1", "F19D11.11", "MYB-RELATED DNA BINDING PROTEIN", "circadian clock associated 1" ] } ] }, { "folder": "EXP041317.PSB-d_dark_growing_suspension_cells.E2FA", "tf_name": "E2FA", "samples": [ { "cell": { "title": "PSB-d dark growing suspension cells" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM1291187" }, { "identifier": "PUBMED:24453163" }, { "identifier": "GEO:GSE53422" }, { "identifier": "GTRD:EXP041317" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA1414.1", "bed_filename": "macs/DAMO/EXP041317.PSB-d_dark_growing_suspension_cells.E2FA/EXP041317.PSB-d_dark_growing_suspension_cells.E2FA.MA1414.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041317.PSB-d_dark_growing_suspension_cells.E2FA/EXP041317.PSB-d_dark_growing_suspension_cells.E2FA.MA1414.1.damo.fa", "profile_name": "E2FA", "synonyms": [ "AT2G36010", "ATE2FA", "E2F TRANSCRIPTION FACTOR-3 E2F3", "E2F transcription factor 3", "F11F19.8", "F11F19_8" ] } ] }, { "folder": "EXP041222.4_day_old_seedlings.FHY3", "tf_name": "FHY3", "samples": [ { "cell": { "title": "4 day old seedlings" }, "biological_condition": "Dark (35S:3FLAG-FHY3-3HA fhy3-4 transgenic line)" } ], "references": [ { "identifier": "GEO:GSM761689" }, { "identifier": "GEO:GSE30711" }, { "identifier": "PUBMED:21803941" }, { "identifier": "GTRD:EXP041222" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0557.1", "bed_filename": "macs/DAMO/EXP041222.4_day_old_seedlings.FHY3/EXP041222.4_day_old_seedlings.FHY3.MA0557.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041222.4_day_old_seedlings.FHY3/EXP041222.4_day_old_seedlings.FHY3.MA0557.1.damo.fa", "profile_name": "FHY3", "synonyms": [ "AT3G22170", "CHLOROPLAST DIVISION MUTANT 45", "CPD45", "far-red elongated hypocotyls 3" ] } ] }, { "folder": "EXP041223.4_day_old_seedlings.FHY3", "tf_name": "FHY3", "samples": [ { "cell": { "title": "4 day old seedlings" }, "biological_condition": "Far-Red (35S:3FLAG-FHY3-3HA fhy3-4 transgenic line)" } ], "references": [ { "identifier": "GEO:GSE30711" }, { "identifier": "GEO:GSM761690" }, { "identifier": "PUBMED:21803941" }, { "identifier": "GTRD:EXP041223" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0557.1", "bed_filename": "macs/DAMO/EXP041223.4_day_old_seedlings.FHY3/EXP041223.4_day_old_seedlings.FHY3.MA0557.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041223.4_day_old_seedlings.FHY3/EXP041223.4_day_old_seedlings.FHY3.MA0557.1.damo.fa", "profile_name": "FHY3", "synonyms": [ "AT3G22170", "CHLOROPLAST DIVISION MUTANT 45", "CPD45", "far-red elongated hypocotyls 3" ] } ] }, { "folder": "EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3", "tf_name": "FHY3", "samples": [ { "cell": { "title": "Inflorescence containing stage 8 and younger flowers" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE69422" }, { "identifier": "GEO:GSM1701005" }, { "identifier": "PUBMED:27469166" }, { "identifier": "GEO:GSM1701006" }, { "identifier": "GTRD:EXP041376" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0557.1", "bed_filename": "macs/DAMO/EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3/EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3.MA0557.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3/EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3.MA0557.1.damo.fa", "profile_name": "FHY3", "synonyms": [ "AT3G22170", "CHLOROPLAST DIVISION MUTANT 45", "CPD45", "far-red elongated hypocotyls 3" ] } ] }, { "folder": "EXP041484.above-ground_tissue.FLC", "tf_name": "FLC", "samples": [ { "cell": { "title": "above-ground tissue" }, "biological_condition": "Col FRI genotype" } ], "references": [ { "identifier": "GEO:GSM2392630" }, { "identifier": "GEO:GSM2392632" }, { "identifier": "PUBMED:29203652" }, { "identifier": "GEO:GSE89889" }, { "identifier": "GTRD:EXP041484" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0558.1", "bed_filename": "macs/DAMO/EXP041484.above-ground_tissue.FLC/EXP041484.above-ground_tissue.FLC.MA0558.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041484.above-ground_tissue.FLC/EXP041484.above-ground_tissue.FLC.MA0558.1.damo.fa", "profile_name": "FLC", "synonyms": null } ] }, { "folder": "EXP041443.3_day_old_seedlings.GBF2", "tf_name": "GBF2", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "EtOH mock treatment, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130896" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSE80564" }, { "identifier": "GEO:GSM2130898" }, { "identifier": "GEO:GSM2130894" }, { "identifier": "GTRD:EXP041443" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA1672.1", "bed_filename": "macs/DAMO/EXP041443.3_day_old_seedlings.GBF2/EXP041443.3_day_old_seedlings.GBF2.MA1672.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041443.3_day_old_seedlings.GBF2/EXP041443.3_day_old_seedlings.GBF2.MA1672.1.damo.fa", "profile_name": "GBF2", "synonyms": [ "AT4G01120", "ATBZIP54", "BASIC REGION/LEUCINE ZIPPER MOTIF 5", "F2N1.12", "F2N1_12", "G-box binding factor 2" ] } ] }, { "folder": "EXP041444.3_day_old_seedlings.GBF2", "tf_name": "GBF2", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "10 uM abscisic acid, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130893" }, { "identifier": "GEO:GSM2130897" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130895" }, { "identifier": "GEO:GSE80564" }, { "identifier": "GTRD:EXP041444" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA1672.1", "bed_filename": "macs/DAMO/EXP041444.3_day_old_seedlings.GBF2/EXP041444.3_day_old_seedlings.GBF2.MA1672.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041444.3_day_old_seedlings.GBF2/EXP041444.3_day_old_seedlings.GBF2.MA1672.1.damo.fa", "profile_name": "GBF2", "synonyms": [ "AT4G01120", "ATBZIP54", "BASIC REGION/LEUCINE ZIPPER MOTIF 5", "F2N1.12", "F2N1_12", "G-box binding factor 2" ] } ] }, { "folder": "EXP041451.3_day_old_seedlings.GBF3", "tf_name": "GBF3", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "EtOH mock treatment, 4 hours; dark" } ], "references": [ { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130876" }, { "identifier": "GEO:GSM2130872" }, { "identifier": "GEO:GSE80564" }, { "identifier": "GEO:GSM2130874" }, { "identifier": "GTRD:EXP041451" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA1351.1", "bed_filename": "macs/DAMO/EXP041451.3_day_old_seedlings.GBF3/EXP041451.3_day_old_seedlings.GBF3.MA1351.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041451.3_day_old_seedlings.GBF3/EXP041451.3_day_old_seedlings.GBF3.MA1351.1.damo.fa", "profile_name": "GBF3", "synonyms": [ "AT1G13980", "EMB30", "EMBRYO DEFECTIVE 30", "F16A14.20", "GNOM", "VAN7", "VASCULAR NETWORK 7", "sec7 domain-containing protein" ] } ] } ] }