Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&page=3&q=&species=10116&summary=true
{ "count": 41, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=4&q=&species=10116&summary=true", "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=2&q=&species=10116&summary=true", "results": [ { "folder": "EXP031707.oligodendrocytes.OLIG2", "tf_name": "OLIG2", "samples": [ { "cell": { "title": "oligodendrocytes" }, "biological_condition": "" } ], "references": [ { "identifier": "PUBMED:22365546" }, { "identifier": "GEO:GSM995388" }, { "identifier": "GEO:GSE40506" }, { "identifier": "GTRD:EXP031707" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0678.1", "bed_filename": "macs/DAMO/EXP031707.oligodendrocytes.OLIG2/EXP031707.oligodendrocytes.OLIG2.MA0678.1.damo.bed", "fasta_filename": "macs/DAMO/EXP031707.oligodendrocytes.OLIG2/EXP031707.oligodendrocytes.OLIG2.MA0678.1.damo.fa", "profile_name": "OLIG2", "synonyms": [ "BHLHB1", "OLIGO2", "PRKCBP2", "RACK17", "bHLHe19", "basic domain, helix-loop-helix protein, class B, 1", "class B basic helix-loop-helix protein 1", "class E basic helix-loop-helix protein 19", "human protein kinase C-binding protein RACK17", "oligodendrocyte lineage transcription factor 2", "oligodendrocyte transcription factor 2", "oligodendrocyte-specific bHLH transcription factor 2", "protein kinase C-binding protein 2" ] } ] }, { "folder": "EXP036523.oligodendrocytes.OLIG2", "tf_name": "OLIG2", "samples": [ { "cell": { "title": "oligodendrocytes" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE84011" }, { "identifier": "GEO:GSM2225636" }, { "identifier": "PUBMED:27733608" }, { "identifier": "GTRD:EXP036523" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0678.1", "bed_filename": "macs/DAMO/EXP036523.oligodendrocytes.OLIG2/EXP036523.oligodendrocytes.OLIG2.MA0678.1.damo.bed", "fasta_filename": "macs/DAMO/EXP036523.oligodendrocytes.OLIG2/EXP036523.oligodendrocytes.OLIG2.MA0678.1.damo.fa", "profile_name": "OLIG2", "synonyms": [ "BHLHB1", "OLIGO2", "PRKCBP2", "RACK17", "bHLHe19", "basic domain, helix-loop-helix protein, class B, 1", "class B basic helix-loop-helix protein 1", "class E basic helix-loop-helix protein 19", "human protein kinase C-binding protein RACK17", "oligodendrocyte lineage transcription factor 2", "oligodendrocyte transcription factor 2", "oligodendrocyte-specific bHLH transcription factor 2", "protein kinase C-binding protein 2" ] } ] }, { "folder": "EXP033674.GC_pituitary_cells.POU1F1", "tf_name": "POU1F1", "samples": [ { "cell": { "title": "GC pituitary cells" }, "biological_condition": "none" } ], "references": [ { "identifier": "GEO:GSE58009" }, { "identifier": "PUBMED:25119036" }, { "identifier": "GEO:GSM1399418" }, { "identifier": "GTRD:EXP033674" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0784.1", "bed_filename": "macs/DAMO/EXP033674.GC_pituitary_cells.POU1F1/EXP033674.GC_pituitary_cells.POU1F1.MA0784.1.damo.bed", "fasta_filename": "macs/DAMO/EXP033674.GC_pituitary_cells.POU1F1/EXP033674.GC_pituitary_cells.POU1F1.MA0784.1.damo.fa", "profile_name": "POU1F1", "synonyms": [ "CPHD1", "GHF-1", "PIT1", "POU class 1 homeobox 1", "POU domain, class 1, transcription factor 1", "POU1F1a", "Pit-1", "growth hormone factor 1", "pituitary transcript factor 1", "pituitary-specific positive transcription factor 1" ] } ] }, { "folder": "EXP033675.GC_pituitary_cells.POU1F1", "tf_name": "POU1F1", "samples": [ { "cell": { "title": "GC pituitary cells" }, "biological_condition": "none" } ], "references": [ { "identifier": "GEO:GSE58009" }, { "identifier": "PUBMED:25119036" }, { "identifier": "GEO:GSM1399419" }, { "identifier": "GTRD:EXP033675" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0784.1", "bed_filename": "macs/DAMO/EXP033675.GC_pituitary_cells.POU1F1/EXP033675.GC_pituitary_cells.POU1F1.MA0784.1.damo.bed", "fasta_filename": "macs/DAMO/EXP033675.GC_pituitary_cells.POU1F1/EXP033675.GC_pituitary_cells.POU1F1.MA0784.1.damo.fa", "profile_name": "POU1F1", "synonyms": [ "CPHD1", "GHF-1", "PIT1", "POU class 1 homeobox 1", "POU domain, class 1, transcription factor 1", "POU1F1a", "Pit-1", "growth hormone factor 1", "pituitary transcript factor 1", "pituitary-specific positive transcription factor 1" ] } ] }, { "folder": "EXP037001.hippocampal_neural_stem_cells.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "hippocampal neural stem cells" }, "biological_condition": "quiescence" } ], "references": [ { "identifier": "PUBMED:27819263" }, { "identifier": "GEO:GSM1816596" }, { "identifier": "GEO:GSE70695" }, { "identifier": "GTRD:EXP037001" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037001.hippocampal_neural_stem_cells.REST/EXP037001.hippocampal_neural_stem_cells.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037001.hippocampal_neural_stem_cells.REST/EXP037001.hippocampal_neural_stem_cells.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] } ] }, { "folder": "EXP037002.hippocampal_neural_stem_cells.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "hippocampal neural stem cells" }, "biological_condition": "quiescence" } ], "references": [ { "identifier": "GEO:GSM1816597" }, { "identifier": "PUBMED:27819263" }, { "identifier": "GEO:GSE70695" }, { "identifier": "GTRD:EXP037002" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037002.hippocampal_neural_stem_cells.REST/EXP037002.hippocampal_neural_stem_cells.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037002.hippocampal_neural_stem_cells.REST/EXP037002.hippocampal_neural_stem_cells.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] } ] }, { "folder": "EXP037003.hippocampal_neural_stem_cells.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "hippocampal neural stem cells" }, "biological_condition": "proliferation" } ], "references": [ { "identifier": "GEO:GSM1816599" }, { "identifier": "GEO:GSE70695" }, { "identifier": "PUBMED:27819263" }, { "identifier": "GTRD:EXP037003" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037003.hippocampal_neural_stem_cells.REST/EXP037003.hippocampal_neural_stem_cells.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037003.hippocampal_neural_stem_cells.REST/EXP037003.hippocampal_neural_stem_cells.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] } ] }, { "folder": "EXP037004.hippocampal_neural_stem_cells.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "hippocampal neural stem cells" }, "biological_condition": "proliferation" } ], "references": [ { "identifier": "PUBMED:27819263" }, { "identifier": "GEO:GSM1816600" }, { "identifier": "GEO:GSE70695" }, { "identifier": "GTRD:EXP037004" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037004.hippocampal_neural_stem_cells.REST/EXP037004.hippocampal_neural_stem_cells.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037004.hippocampal_neural_stem_cells.REST/EXP037004.hippocampal_neural_stem_cells.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] } ] }, { "folder": "EXP037909.paraventricular_nucleus.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "paraventricular nucleus" }, "biological_condition": "CNQX/MK-801 (50 uM) for 52 h" } ], "references": [ { "identifier": "GEO:GSM2339183" }, { "identifier": "GEO:GSE87709" }, { "identifier": "PUBMED:28070121" }, { "identifier": "GTRD:EXP037909" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037909.paraventricular_nucleus.REST/EXP037909.paraventricular_nucleus.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037909.paraventricular_nucleus.REST/EXP037909.paraventricular_nucleus.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] } ] }, { "folder": "EXP037908.paraventricular_nucleus.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "paraventricular nucleus" }, "biological_condition": "" } ], "references": [ { "identifier": "PUBMED:28070121" }, { "identifier": "GEO:GSE87709" }, { "identifier": "GEO:GSM2339182" }, { "identifier": "GTRD:EXP037908" } ], "species": { "name": "Rattus norvegicus" }, "datasets": [ { "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037908.paraventricular_nucleus.REST/EXP037908.paraventricular_nucleus.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037908.paraventricular_nucleus.REST/EXP037908.paraventricular_nucleus.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] } ] } ] }