Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&page=2&q=ESC&summary=true
{ "count": 51, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=3&q=ESC&summary=true", "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&q=ESC&summary=true", "results": [ { "folder": "GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "PRIMED" } ], "references": [ { "identifier": "GEO:GSE69646" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.CTCF/GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.CTCF/GSE69646.hESC-1_Embryonic_stem_cells_PRIMED.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] } ] }, { "folder": "GSE26097.hESC-1_Embryonic_stem_cells.EOMES", "tf_name": "EOMES", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE26097" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0800.1", "bed_filename": "macs/DAMO/GSE26097.hESC-1_Embryonic_stem_cells.EOMES/GSE26097.hESC-1_Embryonic_stem_cells.EOMES.MA0800.1.damo.bed", "fasta_filename": "macs/DAMO/GSE26097.hESC-1_Embryonic_stem_cells.EOMES/GSE26097.hESC-1_Embryonic_stem_cells.EOMES.MA0800.1.damo.fa", "profile_name": "EOMES", "synonyms": [ "T-box brain protein 2", "TBR2", "eomesodermin", "eomesodermin homolog" ] } ] }, { "folder": "EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3", "tf_name": "FHY3", "samples": [ { "cell": { "title": "Inflorescence containing stage 8 and younger flowers" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE69422" }, { "identifier": "GEO:GSM1701005" }, { "identifier": "PUBMED:27469166" }, { "identifier": "GEO:GSM1701006" }, { "identifier": "GTRD:EXP041376" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0557.1", "bed_filename": "macs/DAMO/EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3/EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3.MA0557.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3/EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3.MA0557.1.damo.fa", "profile_name": "FHY3", "synonyms": [ "AT3G22170", "CHLOROPLAST DIVISION MUTANT 45", "CPD45", "far-red elongated hypocotyls 3" ] } ] }, { "folder": "GSE69539.hESC-1_Embryonic_stem_cells.FOSL2", "tf_name": "FOSL2", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE69539" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0478.1", "bed_filename": "macs/DAMO/GSE69539.hESC-1_Embryonic_stem_cells.FOSL2/GSE69539.hESC-1_Embryonic_stem_cells.FOSL2.MA0478.1.damo.bed", "fasta_filename": "macs/DAMO/GSE69539.hESC-1_Embryonic_stem_cells.FOSL2/GSE69539.hESC-1_Embryonic_stem_cells.FOSL2.MA0478.1.damo.fa", "profile_name": "FOSL2", "synonyms": [ "FOS like 2, AP-1 trancription factor subunit", "FOS like 2, AP-1 transcription factor subunit", "FOS like antigen 2", "FRA-2", "FRA2", "fos-related antigen 2" ] } ] }, { "folder": "GSE69542.hESC-1_Embryonic_stem_cells.FOXO1", "tf_name": "FOXO1", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE69542" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0480.1", "bed_filename": "macs/DAMO/GSE69542.hESC-1_Embryonic_stem_cells.FOXO1/GSE69542.hESC-1_Embryonic_stem_cells.FOXO1.MA0480.1.damo.bed", "fasta_filename": "macs/DAMO/GSE69542.hESC-1_Embryonic_stem_cells.FOXO1/GSE69542.hESC-1_Embryonic_stem_cells.FOXO1.MA0480.1.damo.fa", "profile_name": "Foxo1", "synonyms": [ "AI876417", "Afxh", "FKHR", "Fkhr1", "Foxo1a", "forkhead box O1", "forkhead box O1a", "forkhead box protein O1", "forkhead box protein O1A", "forkhead in rhabdomyosarcoma", "forkhead protein 1" ] } ] }, { "folder": "EXP052007.epiblast_cells.GRHL2", "tf_name": "GRHL2", "samples": [ { "cell": { "title": "epiblast cells" }, "biological_condition": "Origin: cell line V6.5 ESCs Treatment: grown in 2i, day 3 (GSKi and MEKi), doxycycline was added at 0.5ug/ml for 24hrs Genotype: wildtype" } ], "references": [ { "identifier": "GEO:GSM2436762" }, { "identifier": "GEO:GSE92745" }, { "identifier": "PUBMED:30017589" }, { "identifier": "GTRD:EXP052007" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA1105.2", "bed_filename": "macs/DAMO/EXP052007.epiblast_cells.GRHL2/EXP052007.epiblast_cells.GRHL2.MA1105.2.damo.bed", "fasta_filename": "macs/DAMO/EXP052007.epiblast_cells.GRHL2/EXP052007.epiblast_cells.GRHL2.MA1105.2.damo.fa", "profile_name": "GRHL2", "synonyms": [ "BOM", "DFNA28", "ECTDS", "PPCD4", "TFCP2L3", "brother of mammalian grainyhead", "brother-of-MGR", "grainyhead like transcription factor 2", "grainyhead-like 2", "grainyhead-like protein 2 homolog", "transcription factor CP2-like 3" ] } ] }, { "folder": "EXP052008.epiblast_cells.GRHL2", "tf_name": "GRHL2", "samples": [ { "cell": { "title": "epiblast cells" }, "biological_condition": "Origin: cell line V6.5 ESCs Treatment: grown in 2i, day 3 (GSKi and MEKi), doxycycline was added at 0.5ug/ml for 24hrs Genotype: wildtype" } ], "references": [ { "identifier": "GEO:GSE92745" }, { "identifier": "PUBMED:30017589" }, { "identifier": "GEO:GSM2436763" }, { "identifier": "GTRD:EXP052008" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA1105.2", "bed_filename": "macs/DAMO/EXP052008.epiblast_cells.GRHL2/EXP052008.epiblast_cells.GRHL2.MA1105.2.damo.bed", "fasta_filename": "macs/DAMO/EXP052008.epiblast_cells.GRHL2/EXP052008.epiblast_cells.GRHL2.MA1105.2.damo.fa", "profile_name": "GRHL2", "synonyms": [ "BOM", "DFNA28", "ECTDS", "PPCD4", "TFCP2L3", "brother of mammalian grainyhead", "brother-of-MGR", "grainyhead like transcription factor 2", "grainyhead-like 2", "grainyhead-like protein 2 homolog", "transcription factor CP2-like 3" ] } ] }, { "folder": "EXP052011.epiblast_cells.GRHL2", "tf_name": "GRHL2", "samples": [ { "cell": { "title": "epiblast cells" }, "biological_condition": "Origin: cell line V6.5 ESCs Treatment: grown in 2i, day 3 (GSKi and MEKi), doxycycline was added at 0.5ug/ml for 24hrs Genotype: GRHL2 knockout" } ], "references": [ { "identifier": "GEO:GSM2436772" }, { "identifier": "GEO:GSE92745" }, { "identifier": "PUBMED:30017589" }, { "identifier": "GTRD:EXP052011" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA1105.2", "bed_filename": "macs/DAMO/EXP052011.epiblast_cells.GRHL2/EXP052011.epiblast_cells.GRHL2.MA1105.2.damo.bed", "fasta_filename": "macs/DAMO/EXP052011.epiblast_cells.GRHL2/EXP052011.epiblast_cells.GRHL2.MA1105.2.damo.fa", "profile_name": "GRHL2", "synonyms": [ "BOM", "DFNA28", "ECTDS", "PPCD4", "TFCP2L3", "brother of mammalian grainyhead", "brother-of-MGR", "grainyhead like transcription factor 2", "grainyhead-like 2", "grainyhead-like protein 2 homolog", "transcription factor CP2-like 3" ] } ] }, { "folder": "EXP052012.epiblast_cells.GRHL2", "tf_name": "GRHL2", "samples": [ { "cell": { "title": "epiblast cells" }, "biological_condition": "Origin: cell line V6.5 ESCs Treatment: grown in 2i, day 3 (GSKi and MEKi), doxycycline was added at 0.5ug/ml for 24hrs Genotype: GRHL2 knockout" } ], "references": [ { "identifier": "GEO:GSM2436773" }, { "identifier": "GEO:GSE92745" }, { "identifier": "PUBMED:30017589" }, { "identifier": "GTRD:EXP052012" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA1105.2", "bed_filename": "macs/DAMO/EXP052012.epiblast_cells.GRHL2/EXP052012.epiblast_cells.GRHL2.MA1105.2.damo.bed", "fasta_filename": "macs/DAMO/EXP052012.epiblast_cells.GRHL2/EXP052012.epiblast_cells.GRHL2.MA1105.2.damo.fa", "profile_name": "GRHL2", "synonyms": [ "BOM", "DFNA28", "ECTDS", "PPCD4", "TFCP2L3", "brother of mammalian grainyhead", "brother-of-MGR", "grainyhead like transcription factor 2", "grainyhead-like 2", "grainyhead-like protein 2 homolog", "transcription factor CP2-like 3" ] } ] }, { "folder": "GSE64758.hESC-1_Embryonic_stem_cells.LEF1", "tf_name": "LEF1", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE64758" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0768.1", "bed_filename": "macs/DAMO/GSE64758.hESC-1_Embryonic_stem_cells.LEF1/GSE64758.hESC-1_Embryonic_stem_cells.LEF1.MA0768.1.damo.bed", "fasta_filename": "macs/DAMO/GSE64758.hESC-1_Embryonic_stem_cells.LEF1/GSE64758.hESC-1_Embryonic_stem_cells.LEF1.MA0768.1.damo.fa", "profile_name": "LEF1", "synonyms": [ "LEF-1", "T cell-specific transcription factor 1-alpha", "TCF1-alpha", "TCF10", "TCF1ALPHA", "TCF7L3", "lymphoid enhancer binding factor 1", "lymphoid enhancer-binding factor 1" ] } ] } ] }