Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&page=2&q=&species=4932&summary=true
{ "count": 29, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=3&q=&species=4932&summary=true", "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&q=&species=4932&summary=true", "results": [ { "folder": "EXP041802.S__cerevisiae_cells.GCN4", "tf_name": "GCN4", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "W303 (Z1256); GCN4-myc; RTG3-knockout (co-factor)" } ], "references": [ { "identifier": "GEO:GSE60281" }, { "identifier": "PUBMED:26772747" }, { "identifier": "GEO:GSM1470176" }, { "identifier": "GTRD:EXP041802" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0303.1", "bed_filename": "macs/DAMO/EXP041802.S__cerevisiae_cells.GCN4/EXP041802.S__cerevisiae_cells.GCN4.MA0303.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041802.S__cerevisiae_cells.GCN4/EXP041802.S__cerevisiae_cells.GCN4.MA0303.1.damo.fa", "profile_name": "GCN4", "synonyms": [ "AAS101", "AAS3", "ARG9", "YEL009C", "amino acid starvation-responsive transcription factor GCN4" ] } ] }, { "folder": "EXP042197.S__cerevisiae_cells.GCN4", "tf_name": "GCN4", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "strain: BY4741 MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}0 pEGH 2{mu} URA3 promGAL1-10-GST-GCN4" } ], "references": [ { "identifier": "GEO:GSE85588" }, { "identifier": "PUBMED:28878244" }, { "identifier": "GEO:GSM2278610" }, { "identifier": "GTRD:EXP042197" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0303.1", "bed_filename": "macs/DAMO/EXP042197.S__cerevisiae_cells.GCN4/EXP042197.S__cerevisiae_cells.GCN4.MA0303.1.damo.bed", "fasta_filename": "macs/DAMO/EXP042197.S__cerevisiae_cells.GCN4/EXP042197.S__cerevisiae_cells.GCN4.MA0303.1.damo.fa", "profile_name": "GCN4", "synonyms": [ "AAS101", "AAS3", "ARG9", "YEL009C", "amino acid starvation-responsive transcription factor GCN4" ] } ] }, { "folder": "EXP047711.S__cerevisiae_cells.GCN4", "tf_name": "GCN4", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "Treatment: sulfometuron added; Growth: for mid - long fase(OD600 about 0.6 to 0.8); Genotype: MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0; Strain: BY4741 " } ], "references": [ { "identifier": "GEO:GSM2870578" }, { "identifier": "GEO:GSM2870579" }, { "identifier": "GEO:GSE107532" }, { "identifier": "GEO:GSM2870577" }, { "identifier": "PUBMED:29628310" }, { "identifier": "GEO:GSM2870580" }, { "identifier": "GEO:GSM2870581" }, { "identifier": "GTRD:EXP047711" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0303.1", "bed_filename": "macs/DAMO/EXP047711.S__cerevisiae_cells.GCN4/EXP047711.S__cerevisiae_cells.GCN4.MA0303.1.damo.bed", "fasta_filename": "macs/DAMO/EXP047711.S__cerevisiae_cells.GCN4/EXP047711.S__cerevisiae_cells.GCN4.MA0303.1.damo.fa", "profile_name": "GCN4", "synonyms": [ "AAS101", "AAS3", "ARG9", "YEL009C", "amino acid starvation-responsive transcription factor GCN4" ] } ] }, { "folder": "EXP047712.S__cerevisiae_cells.GCN4", "tf_name": "GCN4", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "Treatment: without adding sulfometuron; Growth: for mid - long fase(OD600 about 0.6 -0.8); Genotype: MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0; Strain: BY4741" } ], "references": [ { "identifier": "PUBMED:29628310" }, { "identifier": "GEO:GSM2870582" }, { "identifier": "GEO:GSE107532" }, { "identifier": "GEO:GSM2870583" }, { "identifier": "GEO:GSM2870584" }, { "identifier": "GTRD:EXP047712" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0303.1", "bed_filename": "macs/DAMO/EXP047712.S__cerevisiae_cells.GCN4/EXP047712.S__cerevisiae_cells.GCN4.MA0303.1.damo.bed", "fasta_filename": "macs/DAMO/EXP047712.S__cerevisiae_cells.GCN4/EXP047712.S__cerevisiae_cells.GCN4.MA0303.1.damo.fa", "profile_name": "GCN4", "synonyms": [ "AAS101", "AAS3", "ARG9", "YEL009C", "amino acid starvation-responsive transcription factor GCN4" ] } ] }, { "folder": "EXP040844.S__cerevisiae_cells.HSF1", "tf_name": "HSF1", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "control" } ], "references": [ { "identifier": "GEO:GSE108736" }, { "identifier": "GEO:GSM2912735" }, { "identifier": "PUBMED:27320198" }, { "identifier": "GTRD:EXP040844" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0319.1", "bed_filename": "macs/DAMO/EXP040844.S__cerevisiae_cells.HSF1/EXP040844.S__cerevisiae_cells.HSF1.MA0319.1.damo.bed", "fasta_filename": "macs/DAMO/EXP040844.S__cerevisiae_cells.HSF1/EXP040844.S__cerevisiae_cells.HSF1.MA0319.1.damo.fa", "profile_name": "HSF1", "synonyms": [ "EXA3", "MAS3", "YGL073W", "stress-responsive transcription factor HSF1" ] } ] }, { "folder": "EXP040845.S__cerevisiae_cells.HSF1", "tf_name": "HSF1", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "heat shock" } ], "references": [ { "identifier": "GEO:GSE108736" }, { "identifier": "GEO:GSM2912736" }, { "identifier": "PUBMED:27320198" }, { "identifier": "GTRD:EXP040845" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0319.1", "bed_filename": "macs/DAMO/EXP040845.S__cerevisiae_cells.HSF1/EXP040845.S__cerevisiae_cells.HSF1.MA0319.1.damo.bed", "fasta_filename": "macs/DAMO/EXP040845.S__cerevisiae_cells.HSF1/EXP040845.S__cerevisiae_cells.HSF1.MA0319.1.damo.fa", "profile_name": "HSF1", "synonyms": [ "EXA3", "MAS3", "YGL073W", "stress-responsive transcription factor HSF1" ] } ] }, { "folder": "EXP041747.S__cerevisiae_cells.HSF1", "tf_name": "HSF1", "samples": [ { "cell": { "title": "S. cerevisiae cells" }, "biological_condition": "HSF1 TAP-tagged yeast cells; none; temperature: 39 C" } ], "references": [ { "identifier": "PUBMED:24349523" }, { "identifier": "GEO:GSE51251" }, { "identifier": "GEO:GSM1241105" }, { "identifier": "GTRD:EXP041747" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0319.1", "bed_filename": "macs/DAMO/EXP041747.S__cerevisiae_cells.HSF1/EXP041747.S__cerevisiae_cells.HSF1.MA0319.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041747.S__cerevisiae_cells.HSF1/EXP041747.S__cerevisiae_cells.HSF1.MA0319.1.damo.fa", "profile_name": "HSF1", "synonyms": [ "EXA3", "MAS3", "YGL073W", "stress-responsive transcription factor HSF1" ] } ] }, { "folder": "EXP046782.SK1_meiotic_cells_4_hours.HSF1", "tf_name": "HSF1", "samples": [ { "cell": { "title": "SK1 meiotic cells (4 hours)" }, "biological_condition": "Treatment: 5 min heat shock, 39 degree; Genotype: Wildtype;" } ], "references": [ { "identifier": "GEO:GSE117653" }, { "identifier": "GEO:GSM3305608" }, { "identifier": "GTRD:EXP046782" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0319.1", "bed_filename": "macs/DAMO/EXP046782.SK1_meiotic_cells_4_hours.HSF1/EXP046782.SK1_meiotic_cells_4_hours.HSF1.MA0319.1.damo.bed", "fasta_filename": "macs/DAMO/EXP046782.SK1_meiotic_cells_4_hours.HSF1/EXP046782.SK1_meiotic_cells_4_hours.HSF1.MA0319.1.damo.fa", "profile_name": "HSF1", "synonyms": [ "EXA3", "MAS3", "YGL073W", "stress-responsive transcription factor HSF1" ] } ] }, { "folder": "EXP046783.SK1_meiotic_cells_4_hours.HSF1", "tf_name": "HSF1", "samples": [ { "cell": { "title": "SK1 meiotic cells (4 hours)" }, "biological_condition": "Treatment: 120 min heat shock, 39 degree; Genotype: Wildtype;" } ], "references": [ { "identifier": "GEO:GSE117653" }, { "identifier": "GEO:GSM3305609" }, { "identifier": "GTRD:EXP046783" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0319.1", "bed_filename": "macs/DAMO/EXP046783.SK1_meiotic_cells_4_hours.HSF1/EXP046783.SK1_meiotic_cells_4_hours.HSF1.MA0319.1.damo.bed", "fasta_filename": "macs/DAMO/EXP046783.SK1_meiotic_cells_4_hours.HSF1/EXP046783.SK1_meiotic_cells_4_hours.HSF1.MA0319.1.damo.fa", "profile_name": "HSF1", "synonyms": [ "EXA3", "MAS3", "YGL073W", "stress-responsive transcription factor HSF1" ] } ] }, { "folder": "EXP042256.W303a_Strain.NDT80", "tf_name": "NDT80", "samples": [ { "cell": { "title": "W303a Strain" }, "biological_condition": "yIN219 strain" } ], "references": [ { "identifier": "GEO:GSE90660" }, { "identifier": "GEO:GSM2410144" }, { "identifier": "GEO:GSM2410145" }, { "identifier": "PUBMED:28327289" }, { "identifier": "GTRD:EXP042256" } ], "species": { "name": "Saccharomyces cerevisiae" }, "datasets": [ { "jaspar_id": "MA0343.1", "bed_filename": "macs/DAMO/EXP042256.W303a_Strain.NDT80/EXP042256.W303a_Strain.NDT80.MA0343.1.damo.bed", "fasta_filename": "macs/DAMO/EXP042256.W303a_Strain.NDT80/EXP042256.W303a_Strain.NDT80.MA0343.1.damo.fa", "profile_name": "NDT80", "synonyms": [ "YHR124W", "transcription factor NDT80" ] } ] } ] }