Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&page=2&q=&species=3702&summary=true
{ "count": 78, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=3&q=&species=3702&summary=true", "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&q=&species=3702&summary=true", "results": [ { "folder": "EXP041211.apical_meristems.AP1", "tf_name": "AP1", "samples": [ { "cell": { "title": "apical meristems" }, "biological_condition": "single treatment of 1 uM DEX to the shoot apex (2 hours)" } ], "references": [ { "identifier": "GEO:GSM506209" }, { "identifier": "PUBMED:20360106" }, { "identifier": "GEO:GSE20176" }, { "identifier": "GTRD:EXP041211" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0940.1", "bed_filename": "macs/DAMO/EXP041211.apical_meristems.AP1/EXP041211.apical_meristems.AP1.MA0940.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041211.apical_meristems.AP1/EXP041211.apical_meristems.AP1.MA0940.1.damo.fa", "profile_name": "AP1", "synonyms": [ "AGAMOUS-like 7", "AGL7", "APETALA1", "AT1G69120", "AtAP1", "F4N2.9", "F4N2_9", "FLORAL HOMEOTIC PROTEIN APETALA1", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP041213.apical_meristems.AP1", "tf_name": "AP1", "samples": [ { "cell": { "title": "apical meristems" }, "biological_condition": "control" } ], "references": [ { "identifier": "GEO:GSE20176" }, { "identifier": "GEO:GSM506211" }, { "identifier": "PUBMED:20360106" }, { "identifier": "GTRD:EXP041213" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0940.1", "bed_filename": "macs/DAMO/EXP041213.apical_meristems.AP1/EXP041213.apical_meristems.AP1.MA0940.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041213.apical_meristems.AP1/EXP041213.apical_meristems.AP1.MA0940.1.damo.fa", "profile_name": "AP1", "synonyms": [ "AGAMOUS-like 7", "AGL7", "APETALA1", "AT1G69120", "AtAP1", "F4N2.9", "F4N2_9", "FLORAL HOMEOTIC PROTEIN APETALA1", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP041282.inflorescence.AP1", "tf_name": "AP1", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "4 days after DEX" } ], "references": [ { "identifier": "GEO:GSE46986" }, { "identifier": "GEO:GSM1142627" }, { "identifier": "PUBMED:24581456" }, { "identifier": "GTRD:EXP041282" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0940.1", "bed_filename": "macs/DAMO/EXP041282.inflorescence.AP1/EXP041282.inflorescence.AP1.MA0940.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041282.inflorescence.AP1/EXP041282.inflorescence.AP1.MA0940.1.damo.fa", "profile_name": "AP1", "synonyms": [ "AGAMOUS-like 7", "AGL7", "APETALA1", "AT1G69120", "AtAP1", "F4N2.9", "F4N2_9", "FLORAL HOMEOTIC PROTEIN APETALA1", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP041283.inflorescence.AP1", "tf_name": "AP1", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "8 days after DEX" } ], "references": [ { "identifier": "PUBMED:24581456" }, { "identifier": "GEO:GSE46986" }, { "identifier": "GEO:GSM1142628" }, { "identifier": "GTRD:EXP041283" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0940.1", "bed_filename": "macs/DAMO/EXP041283.inflorescence.AP1/EXP041283.inflorescence.AP1.MA0940.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041283.inflorescence.AP1/EXP041283.inflorescence.AP1.MA0940.1.damo.fa", "profile_name": "AP1", "synonyms": [ "AGAMOUS-like 7", "AGL7", "APETALA1", "AT1G69120", "AtAP1", "F4N2.9", "F4N2_9", "FLORAL HOMEOTIC PROTEIN APETALA1", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP041240.floral_tissue.AP3", "tf_name": "AP3", "samples": [ { "cell": { "title": "floral tissue" }, "biological_condition": "AP3-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers)" } ], "references": [ { "identifier": "GEO:GSM940586" }, { "identifier": "GEO:GSE38358" }, { "identifier": "PUBMED:22847437" }, { "identifier": "GTRD:EXP041240" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0556.1", "bed_filename": "macs/DAMO/EXP041240.floral_tissue.AP3/EXP041240.floral_tissue.AP3.MA0556.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041240.floral_tissue.AP3/EXP041240.floral_tissue.AP3.MA0556.1.damo.fa", "profile_name": "AP3", "synonyms": [ "APETALA 3", "AT3G54340", "ATAP3", "FLORAL HOMEOTIC PROTEIN APETALA 3", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP046646.whole_3_days_seedings.ARR14", "tf_name": "ARR14", "samples": [ { "cell": { "title": "whole 3 days seedings" }, "biological_condition": "Treatment: 10uM 6BA, 4 hours on LS plates (Lightlong day); Tagline:ypet; Accession: ARR14ypet;" } ], "references": [ { "identifier": "GEO:GSE94486" }, { "identifier": "GEO:GSM2476327" }, { "identifier": "PUBMED:29686312" }, { "identifier": "GTRD:EXP046646" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0947.1", "bed_filename": "macs/DAMO/EXP046646.whole_3_days_seedings.ARR14/EXP046646.whole_3_days_seedings.ARR14.MA0947.1.damo.bed", "fasta_filename": "macs/DAMO/EXP046646.whole_3_days_seedings.ARR14/EXP046646.whole_3_days_seedings.ARR14.MA0947.1.damo.fa", "profile_name": "ARR14", "synonyms": [ "ARR14", "AT2G01760", "T8O11.7", "T8O11_7", "response regulator 14" ] } ] }, { "folder": "EXP041427.3_day_old_seedlings.ATHB-5", "tf_name": "ATHB-5", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "EtOH mock treatment, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130942" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130944" }, { "identifier": "GEO:GSE80564" }, { "identifier": "GEO:GSM2130946" }, { "identifier": "GTRD:EXP041427" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0110.3", "bed_filename": "macs/DAMO/EXP041427.3_day_old_seedlings.ATHB-5/EXP041427.3_day_old_seedlings.ATHB-5.MA0110.3.damo.bed", "fasta_filename": "macs/DAMO/EXP041427.3_day_old_seedlings.ATHB-5/EXP041427.3_day_old_seedlings.ATHB-5.MA0110.3.damo.fa", "profile_name": "ATHB-5", "synonyms": [ "AT5G65310", "ATHB-5", "ATHB5", "MNA5.4", "MNA5_4", "homeobox protein 5" ] } ] }, { "folder": "EXP041428.3_day_old_seedlings.ATHB-5", "tf_name": "ATHB-5", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "10 uM abscisic acid, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130945" }, { "identifier": "GEO:GSE80564" }, { "identifier": "GEO:GSM2130943" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130941" }, { "identifier": "GTRD:EXP041428" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0110.3", "bed_filename": "macs/DAMO/EXP041428.3_day_old_seedlings.ATHB-5/EXP041428.3_day_old_seedlings.ATHB-5.MA0110.3.damo.bed", "fasta_filename": "macs/DAMO/EXP041428.3_day_old_seedlings.ATHB-5/EXP041428.3_day_old_seedlings.ATHB-5.MA0110.3.damo.fa", "profile_name": "ATHB-5", "synonyms": [ "AT5G65310", "ATHB-5", "ATHB5", "MNA5.4", "MNA5_4", "homeobox protein 5" ] } ] }, { "folder": "EXP041419.3_day_old_seedlings.ATHB-7", "tf_name": "ATHB-7", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "EtOH mock treatment, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSE80564" }, { "identifier": "GEO:GSM2130968" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130964" }, { "identifier": "GEO:GSM2130966" }, { "identifier": "GTRD:EXP041419" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0954.2", "bed_filename": "macs/DAMO/EXP041419.3_day_old_seedlings.ATHB-7/EXP041419.3_day_old_seedlings.ATHB-7.MA0954.2.damo.bed", "fasta_filename": "macs/DAMO/EXP041419.3_day_old_seedlings.ATHB-7/EXP041419.3_day_old_seedlings.ATHB-7.MA0954.2.damo.fa", "profile_name": "ATHB-7", "synonyms": [ "ARABIDOPSIS THALIANA HOMEOBOX 7", "AT2G46680", "ATHB-7", "ATHB7", "T3A4.6", "homeobox 7" ] } ] }, { "folder": "EXP041420.3_day_old_seedlings.ATHB-7", "tf_name": "ATHB-7", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "10 uM abscisic acid, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSE80564" }, { "identifier": "GEO:GSM2130967" }, { "identifier": "GEO:GSM2130963" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130965" }, { "identifier": "GTRD:EXP041420" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0954.2", "bed_filename": "macs/DAMO/EXP041420.3_day_old_seedlings.ATHB-7/EXP041420.3_day_old_seedlings.ATHB-7.MA0954.2.damo.bed", "fasta_filename": "macs/DAMO/EXP041420.3_day_old_seedlings.ATHB-7/EXP041420.3_day_old_seedlings.ATHB-7.MA0954.2.damo.fa", "profile_name": "ATHB-7", "synonyms": [ "ARABIDOPSIS THALIANA HOMEOBOX 7", "AT2G46680", "ATHB-7", "ATHB7", "T3A4.6", "homeobox 7" ] } ] } ] }