Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json
, jsonp
, yaml
,
bed
, and also api
for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&order=tf_name&page=98&q=CTCF&summary=true
https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&order=tf_name&page=97&q=CTCF&summary=true", "results": [ { "folder": "EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL", "tf_name": "CTCFL", "samples": [ { "cell": { "title": "NIH 3T3 (embryonic fibroblasts)" }, "biological_condition": "Stable integrate: pBI-EGFP-FLAG-mCtcfl and pTA-N Treatment: Cells were kept in DMEM supplemented with 2 ug/ml Doxycycline for 48 hrs" } ], "references": [ { "identifier": "GEO:GSM2757305" }, { "identifier": "GEO:GSE103198" }, { "identifier": "GTRD:EXP050132" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA1102.2", "bed_filename": "macs/DAMO/EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL/EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL.MA1102.2.damo.bed", "fasta_filename": "macs/DAMO/EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL/EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL.MA1102.2.damo.fa", "profile_name": "CTCFL", "synonyms": [ "BORIS", "BORIS-like protein", "CCCTC-binding factor like", "CT27", "CTCF-T", "HMGB1L1", "brother of the regulator of imprinted sites", "cancer/testis antigen 27", "dJ579F20.2", "transcriptional repressor CTCFL" ] } ] }, { "folder": "EXP050134.P19_embryonic_carcinoma.CTCFL", "tf_name": "CTCFL", "samples": [ { "cell": { "title": "P19 (embryonic carcinoma)" }, "biological_condition": "Treatment: Cells were kept in DMEM supplemented with 2 ug/ml Doxycycline for 48 hrs" } ], "references": [ { "identifier": "GEO:GSM2757308" }, { "identifier": "GEO:GSE103198" }, { "identifier": "GTRD:EXP050134" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA1102.2", "bed_filename": "macs/DAMO/EXP050134.P19_embryonic_carcinoma.CTCFL/EXP050134.P19_embryonic_carcinoma.CTCFL.MA1102.2.damo.bed", "fasta_filename": "macs/DAMO/EXP050134.P19_embryonic_carcinoma.CTCFL/EXP050134.P19_embryonic_carcinoma.CTCFL.MA1102.2.damo.fa", "profile_name": "CTCFL", "synonyms": [ "BORIS", "BORIS-like protein", "CCCTC-binding factor like", "CT27", "CTCF-T", "HMGB1L1", "brother of the regulator of imprinted sites", "cancer/testis antigen 27", "dJ579F20.2", "transcriptional repressor CTCFL" ] } ] }, { "folder": "GSE70764.Delta47_plasma_cell_myeloma.CTCFL", "tf_name": "CTCFL", "samples": [ { "cell": { "title": "Delta47 (plasma cell myeloma)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE70764" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA1102.2", "bed_filename": "macs/DAMO/GSE70764.Delta47_plasma_cell_myeloma.CTCFL/GSE70764.Delta47_plasma_cell_myeloma.CTCFL.MA1102.2.damo.bed", "fasta_filename": "macs/DAMO/GSE70764.Delta47_plasma_cell_myeloma.CTCFL/GSE70764.Delta47_plasma_cell_myeloma.CTCFL.MA1102.2.damo.fa", "profile_name": "CTCFL", "synonyms": [ "BORIS", "BORIS-like protein", "CCCTC-binding factor like", "CT27", "CTCF-T", "HMGB1L1", "brother of the regulator of imprinted sites", "cancer/testis antigen 27", "dJ579F20.2", "transcriptional repressor CTCFL" ] } ] }, { "folder": "GSE70764.K562_myelogenous_leukemia.CTCFL", "tf_name": "CTCFL", "samples": [ { "cell": { "title": "K562 (myelogenous leukemia)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE70764" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA1102.2", "bed_filename": "macs/DAMO/GSE70764.K562_myelogenous_leukemia.CTCFL/GSE70764.K562_myelogenous_leukemia.CTCFL.MA1102.2.damo.bed", "fasta_filename": "macs/DAMO/GSE70764.K562_myelogenous_leukemia.CTCFL/GSE70764.K562_myelogenous_leukemia.CTCFL.MA1102.2.damo.fa", "profile_name": "CTCFL", "synonyms": [ "BORIS", "BORIS-like protein", "CCCTC-binding factor like", "CT27", "CTCF-T", "HMGB1L1", "brother of the regulator of imprinted sites", "cancer/testis antigen 27", "dJ579F20.2", "transcriptional repressor CTCFL" ] } ] }, { "folder": "GSE70764.NHDF.CTCFL", "tf_name": "CTCFL", "samples": [ { "cell": null, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE70764" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA1102.2", "bed_filename": "macs/DAMO/GSE70764.NHDF.CTCFL/GSE70764.NHDF.CTCFL.MA1102.2.damo.bed", "fasta_filename": "macs/DAMO/GSE70764.NHDF.CTCFL/GSE70764.NHDF.CTCFL.MA1102.2.damo.fa", "profile_name": "CTCFL", "synonyms": [ "BORIS", "BORIS-like protein", "CCCTC-binding factor like", "CT27", "CTCF-T", "HMGB1L1", "brother of the regulator of imprinted sites", "cancer/testis antigen 27", "dJ579F20.2", "transcriptional repressor CTCFL" ] } ] }, { "folder": "GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL", "tf_name": "CTCFL", "samples": [ { "cell": { "title": "OVCAR8 (high grade ovarian serous adenocarcinoma)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE70764" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA1102.2", "bed_filename": "macs/DAMO/GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL/GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL.MA1102.2.damo.bed", "fasta_filename": "macs/DAMO/GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL/GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL.MA1102.2.damo.fa", "profile_name": "CTCFL", "synonyms": [ "BORIS", "BORIS-like protein", "CCCTC-binding factor like", "CT27", "CTCF-T", "HMGB1L1", "brother of the regulator of imprinted sites", "cancer/testis antigen 27", "dJ579F20.2", "transcriptional repressor CTCFL" ] } ] }, { "folder": "EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1", "tf_name": "ESR1", "samples": [ { "cell": { "title": "MCF7 (Invasive ductal breast carcinoma)" }, "biological_condition": "siCTCF" } ], "references": [ { "identifier": "GEO:GSE85106" }, { "identifier": "GEO:GSM2257828" }, { "identifier": "PUBMED:27638884" }, { "identifier": "GTRD:EXP037655" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0112.3", "bed_filename": "macs/DAMO/EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1/EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1.MA0112.3.damo.bed", "fasta_filename": "macs/DAMO/EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1/EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1.MA0112.3.damo.fa", "profile_name": "ESR1", "synonyms": [ "E2 receptor alpha", "ER", "ER-alpha", "ESR", "ESRA", "ESTRR", "Era", "NR3A1", "estradiol receptor", "estrogen nuclear receptor alpha", "estrogen receptor", "estrogen receptor 1", "estrogen receptor alpha E1-E2-1-2", "estrogen receptor alpha E1-N2-E2-1-2", "nuclear receptor subfamily 3 group A member 1", "oestrogen receptor alpha" ] } ] } ] }{ "count": 977, "next": null, "previous": "