Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&order=folder&q=&species=7955&summary=true
{
"count": 6,
"next": null,
"previous": null,
"results": [
{
"folder": "EXP041072.10_hpf_embryo_bud_stage.CDX4",
"tf_name": "CDX4",
"samples": [
{
"cell": {
"title": "10 hpf embryo (bud stage)"
},
"biological_condition": ""
}
],
"references": [
{
"identifier": "PUBMED:24286030"
},
{
"identifier": "GEO:GSE48254"
},
{
"identifier": "GEO:GSM1173379"
},
{
"identifier": "GTRD:EXP041072"
}
],
"species": {
"name": "Danio rerio"
},
"datasets": [
{
"jaspar_id": "MA1473.1",
"bed_filename": "macs/DAMO/EXP041072.10_hpf_embryo_bud_stage.CDX4/EXP041072.10_hpf_embryo_bud_stage.CDX4.MA1473.1.damo.bed",
"fasta_filename": "macs/DAMO/EXP041072.10_hpf_embryo_bud_stage.CDX4/EXP041072.10_hpf_embryo_bud_stage.CDX4.MA1473.1.damo.fa",
"profile_name": "CDX4",
"synonyms": [
"caudal type homeobox 4",
"caudal type homeobox transcription factor 4",
"caudal-type homeobox protein 4",
"homeobox protein CDX-4"
]
}
]
},
{
"folder": "EXP041020.10_hpf_embryo_bud_stage.CTCF",
"tf_name": "CTCF",
"samples": [
{
"cell": {
"title": "10 hpf embryo (bud stage)"
},
"biological_condition": ""
}
],
"references": [
{
"identifier": "GEO:GSE84600"
},
{
"identifier": "PUBMED:29158440"
},
{
"identifier": "GEO:GSM2242561"
},
{
"identifier": "GEO:GSM2242562"
},
{
"identifier": "GTRD:EXP041020"
}
],
"species": {
"name": "Danio rerio"
},
"datasets": [
{
"jaspar_id": "MA0139.1",
"bed_filename": "macs/DAMO/EXP041020.10_hpf_embryo_bud_stage.CTCF/EXP041020.10_hpf_embryo_bud_stage.CTCF.MA0139.1.damo.bed",
"fasta_filename": "macs/DAMO/EXP041020.10_hpf_embryo_bud_stage.CTCF/EXP041020.10_hpf_embryo_bud_stage.CTCF.MA0139.1.damo.fa",
"profile_name": "CTCF",
"synonyms": [
"11 zinc finger transcriptional repressor",
"11-zinc finger protein",
"CCCTC-binding factor",
"CCCTC-binding factor (zinc finger protein)",
"CFAP108",
"CTCFL paralog",
"FAP108",
"MRD21",
"transcriptional repressor CTCF"
]
}
]
},
{
"folder": "EXP041005.4_5_hpf_embryo.FOXH1",
"tf_name": "FOXH1",
"samples": [
{
"cell": {
"title": "4.5 hpf embryo"
},
"biological_condition": "none"
}
],
"references": [
{
"identifier": "GEO:GSE67648"
},
{
"identifier": "PUBMED:25869585"
},
{
"identifier": "GEO:GSM1652663"
},
{
"identifier": "GTRD:EXP041005"
}
],
"species": {
"name": "Danio rerio"
},
"datasets": [
{
"jaspar_id": "MA0479.1",
"bed_filename": "macs/DAMO/EXP041005.4_5_hpf_embryo.FOXH1/EXP041005.4_5_hpf_embryo.FOXH1.MA0479.1.damo.bed",
"fasta_filename": "macs/DAMO/EXP041005.4_5_hpf_embryo.FOXH1/EXP041005.4_5_hpf_embryo.FOXH1.MA0479.1.damo.fa",
"profile_name": "FOXH1",
"synonyms": [
"FAST-1",
"FAST1",
"TGF-beta/activin signal transducer",
"fast-2",
"forkhead activin signal transducer 2",
"forkhead activin signal transducer-1",
"forkhead box H1",
"forkhead box protein H1",
"hFAST-1"
]
}
]
},
{
"folder": "EXP041006.4_5_hpf_embryo.FOXH1",
"tf_name": "FOXH1",
"samples": [
{
"cell": {
"title": "4.5 hpf embryo"
},
"biological_condition": "Squint injection"
}
],
"references": [
{
"identifier": "GEO:GSM1652664"
},
{
"identifier": "PUBMED:25869585"
},
{
"identifier": "GEO:GSE67648"
},
{
"identifier": "GTRD:EXP041006"
}
],
"species": {
"name": "Danio rerio"
},
"datasets": [
{
"jaspar_id": "MA0479.1",
"bed_filename": "macs/DAMO/EXP041006.4_5_hpf_embryo.FOXH1/EXP041006.4_5_hpf_embryo.FOXH1.MA0479.1.damo.bed",
"fasta_filename": "macs/DAMO/EXP041006.4_5_hpf_embryo.FOXH1/EXP041006.4_5_hpf_embryo.FOXH1.MA0479.1.damo.fa",
"profile_name": "FOXH1",
"synonyms": [
"FAST-1",
"FAST1",
"TGF-beta/activin signal transducer",
"fast-2",
"forkhead activin signal transducer 2",
"forkhead activin signal transducer-1",
"forkhead box H1",
"forkhead box protein H1",
"hFAST-1"
]
}
]
},
{
"folder": "EXP040985.embryos_late_blastula.SOX2",
"tf_name": "SOX2",
"samples": [
{
"cell": {
"title": "embryos, late blastula"
},
"biological_condition": ""
}
],
"references": [
{
"identifier": "PUBMED:23950494"
},
{
"identifier": "GEO:GSE39780"
},
{
"identifier": "GEO:GSM978984"
},
{
"identifier": "GTRD:EXP040985"
}
],
"species": {
"name": "Danio rerio"
},
"datasets": [
{
"jaspar_id": "MA0142.1",
"bed_filename": "macs/DAMO/EXP040985.embryos_late_blastula.SOX2/EXP040985.embryos_late_blastula.SOX2.MA0142.1.damo.bed",
"fasta_filename": "macs/DAMO/EXP040985.embryos_late_blastula.SOX2/EXP040985.embryos_late_blastula.SOX2.MA0142.1.damo.fa",
"profile_name": "Pou5f1::Sox2",
"synonyms": [
"NF-A3",
"Oct-3",
"Oct-3/4",
"Oct-4",
"Oct3",
"Oct3/4",
"Oct4",
"Otf-3",
"Otf-4",
"Otf3",
"Otf3-rs7",
"Otf3g",
"Otf4",
"POU domain class 5 transcription factor 1 transcript variant 2 oct4b'",
"POU domain class 5 transcription factor 1 transcript variant 3 oct4b",
"POU domain, class 5, transcription factor 1",
"SRY (sex determining region Y)-box 2",
"SRY-box containing gene 2",
"Sox-2",
"lcc",
"octamer-binding protein 3",
"octamer-binding protein 4",
"octamer-binding transcription factor 3",
"octamer-binding transcription factor 4 alternative",
"transcription factor SOX-2",
"ysb"
]
},
{
"jaspar_id": "MA0143.4",
"bed_filename": "macs/DAMO/EXP040985.embryos_late_blastula.SOX2/EXP040985.embryos_late_blastula.SOX2.MA0143.4.damo.bed",
"fasta_filename": "macs/DAMO/EXP040985.embryos_late_blastula.SOX2/EXP040985.embryos_late_blastula.SOX2.MA0143.4.damo.fa",
"profile_name": "SOX2",
"synonyms": [
"ANOP3",
"MCOPS3",
"SRY (sex determining region Y)-box 2",
"SRY-box 2",
"SRY-box transcription factor 2",
"SRY-related HMG-box gene 2",
"sex determining region Y-box 2",
"transcription factor SOX-2",
"transcription factor SOX2"
]
}
]
},
{
"folder": "EXP041000.10S_embryo.TBX6",
"tf_name": "TBX6",
"samples": [
{
"cell": {
"title": "10S embryo"
},
"biological_condition": ""
}
],
"references": [
{
"identifier": "GEO:GSM1379661"
},
{
"identifier": "PUBMED:25725067"
},
{
"identifier": "GEO:GSE57332"
},
{
"identifier": "GTRD:EXP041000"
}
],
"species": {
"name": "Danio rerio"
},
"datasets": [
{
"jaspar_id": "MA1567.1",
"bed_filename": "macs/DAMO/EXP041000.10S_embryo.TBX6/EXP041000.10S_embryo.TBX6.MA1567.1.damo.bed",
"fasta_filename": "macs/DAMO/EXP041000.10S_embryo.TBX6/EXP041000.10S_embryo.TBX6.MA1567.1.damo.fa",
"profile_name": "TBX6",
"synonyms": [
"SCDO5",
"T-box 6",
"T-box protein 6",
"T-box transcription factor 6",
"T-box transcription factor TBX6"
]
}
]
}
]
}