GET

Datasets List

This API provides an easy-to-use REST web interface to query/retrieve data from the UniBind database. The API comes with a human browsable interface and also a programmatic interface which return the results in different formats, including json, jsonp, yaml, bed, and also api for a browsable interface. 
GET /api/v1/datasets/?collection=Robust&format=api&order=-references&page=98&q=CTCF&summary=true
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 977,
    "next": null,
    "previous": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&order=-references&page=97&q=CTCF&summary=true",
    "results": [
        {
            "folder": "EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL",
            "tf_name": "CTCFL",
            "samples": [
                {
                    "cell": {
                        "title": "NIH 3T3 (embryonic fibroblasts)"
                    },
                    "biological_condition": "Stable integrate: pBI-EGFP-FLAG-mCtcfl and pTA-N Treatment: Cells were kept in DMEM supplemented with 2 ug/ml Doxycycline for 48 hrs"
                }
            ],
            "references": [
                {
                    "identifier": "GEO:GSM2757305"
                },
                {
                    "identifier": "GEO:GSE103198"
                },
                {
                    "identifier": "GTRD:EXP050132"
                }
            ],
            "species": {
                "name": "Mus musculus"
            },
            "datasets": [
                {
                    "jaspar_id": "MA1102.2",
                    "bed_filename": "macs/DAMO/EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL/EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL.MA1102.2.damo.bed",
                    "fasta_filename": "macs/DAMO/EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL/EXP050132.NIH_3T3_embryonic_fibroblasts.CTCFL.MA1102.2.damo.fa",
                    "profile_name": "CTCFL",
                    "synonyms": [
                        "BORIS",
                        "BORIS-like protein",
                        "CCCTC-binding factor like",
                        "CT27",
                        "CTCF-T",
                        "HMGB1L1",
                        "brother of the regulator of imprinted sites",
                        "cancer/testis antigen 27",
                        "dJ579F20.2",
                        "transcriptional repressor CTCFL"
                    ]
                }
            ]
        },
        {
            "folder": "EXP050134.P19_embryonic_carcinoma.CTCFL",
            "tf_name": "CTCFL",
            "samples": [
                {
                    "cell": {
                        "title": "P19 (embryonic carcinoma)"
                    },
                    "biological_condition": "Treatment: Cells were kept in DMEM supplemented with 2 ug/ml Doxycycline for 48 hrs"
                }
            ],
            "references": [
                {
                    "identifier": "GEO:GSM2757308"
                },
                {
                    "identifier": "GEO:GSE103198"
                },
                {
                    "identifier": "GTRD:EXP050134"
                }
            ],
            "species": {
                "name": "Mus musculus"
            },
            "datasets": [
                {
                    "jaspar_id": "MA1102.2",
                    "bed_filename": "macs/DAMO/EXP050134.P19_embryonic_carcinoma.CTCFL/EXP050134.P19_embryonic_carcinoma.CTCFL.MA1102.2.damo.bed",
                    "fasta_filename": "macs/DAMO/EXP050134.P19_embryonic_carcinoma.CTCFL/EXP050134.P19_embryonic_carcinoma.CTCFL.MA1102.2.damo.fa",
                    "profile_name": "CTCFL",
                    "synonyms": [
                        "BORIS",
                        "BORIS-like protein",
                        "CCCTC-binding factor like",
                        "CT27",
                        "CTCF-T",
                        "HMGB1L1",
                        "brother of the regulator of imprinted sites",
                        "cancer/testis antigen 27",
                        "dJ579F20.2",
                        "transcriptional repressor CTCFL"
                    ]
                }
            ]
        },
        {
            "folder": "GSE70764.Delta47_plasma_cell_myeloma.CTCFL",
            "tf_name": "CTCFL",
            "samples": [
                {
                    "cell": {
                        "title": "Delta47 (plasma cell myeloma)"
                    },
                    "biological_condition": ""
                }
            ],
            "references": [
                {
                    "identifier": "GEO:GSE70764"
                }
            ],
            "species": {
                "name": "Homo sapiens"
            },
            "datasets": [
                {
                    "jaspar_id": "MA1102.2",
                    "bed_filename": "macs/DAMO/GSE70764.Delta47_plasma_cell_myeloma.CTCFL/GSE70764.Delta47_plasma_cell_myeloma.CTCFL.MA1102.2.damo.bed",
                    "fasta_filename": "macs/DAMO/GSE70764.Delta47_plasma_cell_myeloma.CTCFL/GSE70764.Delta47_plasma_cell_myeloma.CTCFL.MA1102.2.damo.fa",
                    "profile_name": "CTCFL",
                    "synonyms": [
                        "BORIS",
                        "BORIS-like protein",
                        "CCCTC-binding factor like",
                        "CT27",
                        "CTCF-T",
                        "HMGB1L1",
                        "brother of the regulator of imprinted sites",
                        "cancer/testis antigen 27",
                        "dJ579F20.2",
                        "transcriptional repressor CTCFL"
                    ]
                }
            ]
        },
        {
            "folder": "GSE70764.K562_myelogenous_leukemia.CTCFL",
            "tf_name": "CTCFL",
            "samples": [
                {
                    "cell": {
                        "title": "K562 (myelogenous leukemia)"
                    },
                    "biological_condition": ""
                }
            ],
            "references": [
                {
                    "identifier": "GEO:GSE70764"
                }
            ],
            "species": {
                "name": "Homo sapiens"
            },
            "datasets": [
                {
                    "jaspar_id": "MA1102.2",
                    "bed_filename": "macs/DAMO/GSE70764.K562_myelogenous_leukemia.CTCFL/GSE70764.K562_myelogenous_leukemia.CTCFL.MA1102.2.damo.bed",
                    "fasta_filename": "macs/DAMO/GSE70764.K562_myelogenous_leukemia.CTCFL/GSE70764.K562_myelogenous_leukemia.CTCFL.MA1102.2.damo.fa",
                    "profile_name": "CTCFL",
                    "synonyms": [
                        "BORIS",
                        "BORIS-like protein",
                        "CCCTC-binding factor like",
                        "CT27",
                        "CTCF-T",
                        "HMGB1L1",
                        "brother of the regulator of imprinted sites",
                        "cancer/testis antigen 27",
                        "dJ579F20.2",
                        "transcriptional repressor CTCFL"
                    ]
                }
            ]
        },
        {
            "folder": "GSE70764.NHDF.CTCFL",
            "tf_name": "CTCFL",
            "samples": [
                {
                    "cell": null,
                    "biological_condition": ""
                }
            ],
            "references": [
                {
                    "identifier": "GEO:GSE70764"
                }
            ],
            "species": {
                "name": "Homo sapiens"
            },
            "datasets": [
                {
                    "jaspar_id": "MA1102.2",
                    "bed_filename": "macs/DAMO/GSE70764.NHDF.CTCFL/GSE70764.NHDF.CTCFL.MA1102.2.damo.bed",
                    "fasta_filename": "macs/DAMO/GSE70764.NHDF.CTCFL/GSE70764.NHDF.CTCFL.MA1102.2.damo.fa",
                    "profile_name": "CTCFL",
                    "synonyms": [
                        "BORIS",
                        "BORIS-like protein",
                        "CCCTC-binding factor like",
                        "CT27",
                        "CTCF-T",
                        "HMGB1L1",
                        "brother of the regulator of imprinted sites",
                        "cancer/testis antigen 27",
                        "dJ579F20.2",
                        "transcriptional repressor CTCFL"
                    ]
                }
            ]
        },
        {
            "folder": "GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL",
            "tf_name": "CTCFL",
            "samples": [
                {
                    "cell": {
                        "title": "OVCAR8 (high grade ovarian serous adenocarcinoma)"
                    },
                    "biological_condition": ""
                }
            ],
            "references": [
                {
                    "identifier": "GEO:GSE70764"
                }
            ],
            "species": {
                "name": "Homo sapiens"
            },
            "datasets": [
                {
                    "jaspar_id": "MA1102.2",
                    "bed_filename": "macs/DAMO/GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL/GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL.MA1102.2.damo.bed",
                    "fasta_filename": "macs/DAMO/GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL/GSE70764.OVCAR8_high_grade_ovarian_serous_adenocarcinoma.CTCFL.MA1102.2.damo.fa",
                    "profile_name": "CTCFL",
                    "synonyms": [
                        "BORIS",
                        "BORIS-like protein",
                        "CCCTC-binding factor like",
                        "CT27",
                        "CTCF-T",
                        "HMGB1L1",
                        "brother of the regulator of imprinted sites",
                        "cancer/testis antigen 27",
                        "dJ579F20.2",
                        "transcriptional repressor CTCFL"
                    ]
                }
            ]
        },
        {
            "folder": "EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1",
            "tf_name": "ESR1",
            "samples": [
                {
                    "cell": {
                        "title": "MCF7 (Invasive ductal breast carcinoma)"
                    },
                    "biological_condition": "siCTCF"
                }
            ],
            "references": [
                {
                    "identifier": "GEO:GSE85106"
                },
                {
                    "identifier": "GEO:GSM2257828"
                },
                {
                    "identifier": "PUBMED:27638884"
                },
                {
                    "identifier": "GTRD:EXP037655"
                }
            ],
            "species": {
                "name": "Homo sapiens"
            },
            "datasets": [
                {
                    "jaspar_id": "MA0112.3",
                    "bed_filename": "macs/DAMO/EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1/EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1.MA0112.3.damo.bed",
                    "fasta_filename": "macs/DAMO/EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1/EXP037655.MCF7_Invasive_ductal_breast_carcinoma.ESR1.MA0112.3.damo.fa",
                    "profile_name": "ESR1",
                    "synonyms": [
                        "E2 receptor alpha",
                        "ER",
                        "ER-alpha",
                        "ESR",
                        "ESRA",
                        "ESTRR",
                        "Era",
                        "NR3A1",
                        "estradiol receptor",
                        "estrogen nuclear receptor alpha",
                        "estrogen receptor",
                        "estrogen receptor 1",
                        "estrogen receptor alpha E1-E2-1-2",
                        "estrogen receptor alpha E1-N2-E2-1-2",
                        "nuclear receptor subfamily 3 group A member 1",
                        "oestrogen receptor alpha"
                    ]
                }
            ]
        }
    ]
}