folder tf_name title biological_condition identifier name jaspar_id bed_filename fasta_filename profile_name synonyms EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3 SEP3 inflorescence meristems and floral buds (5-7 weeks) wild type PUBMED:19385720|GEO:GSE14600|GEO:GSM364939|GTRD:EXP041202 Arabidopsis thaliana MA0563.1 EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa SEP3 AGAMOUS-like 9|AGL9|AT1G24260|F3I6.19|F3I6_19|K-box region and MADS-box transcription factor family protein|SEPALLATA3|TRANSCRIPTION FACTOR AGL9 EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3 SEP3 inflorescence meristems and floral buds (5-7 weeks) wild type GEO:GSE14600|GEO:GSM364940|PUBMED:19385720|GTRD:EXP041203 Arabidopsis thaliana MA0563.1 EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa SEP3 AGAMOUS-like 9|AGL9|AT1G24260|F3I6.19|F3I6_19|K-box region and MADS-box transcription factor family protein|SEPALLATA3|TRANSCRIPTION FACTOR AGL9 EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3 SEP3 inflorescence meristems and floral buds (5-7 weeks) wild type GEO:GSE14600|PUBMED:19385720|GEO:GSM364942|GTRD:EXP041205 Arabidopsis thaliana MA0563.1 EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa SEP3 AGAMOUS-like 9|AGL9|AT1G24260|F3I6.19|F3I6_19|K-box region and MADS-box transcription factor family protein|SEPALLATA3|TRANSCRIPTION FACTOR AGL9 EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3 SEP3 inflorescence meristems and floral buds (5-7 weeks) agamous mutant (ag-1) GEO:GSE14600|PUBMED:19385720|GEO:GSM364943|GTRD:EXP041206 Arabidopsis thaliana MA0563.1 EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa SEP3 AGAMOUS-like 9|AGL9|AT1G24260|F3I6.19|F3I6_19|K-box region and MADS-box transcription factor family protein|SEPALLATA3|TRANSCRIPTION FACTOR AGL9 EXP041210.apical_meristems.AP1 AP1 apical meristems single treatment of 1 uM DEX to the shoot apex (2 hours) GEO:GSE20176|PUBMED:20360106|GEO:GSM506208|GTRD:EXP041210 Arabidopsis thaliana MA0940.1 EXP041210.apical_meristems.AP1.MA0940.1.damo.bed EXP041210.apical_meristems.AP1.MA0940.1.damo.fa AP1 AGAMOUS-like 7|AGL7|APETALA1|AT1G69120|AtAP1|F4N2.9|F4N2_9|FLORAL HOMEOTIC PROTEIN APETALA1|K-box region and MADS-box transcription factor family protein EXP041211.apical_meristems.AP1 AP1 apical meristems single treatment of 1 uM DEX to the shoot apex (2 hours) GEO:GSM506209|PUBMED:20360106|GEO:GSE20176|GTRD:EXP041211 Arabidopsis thaliana MA0940.1 EXP041211.apical_meristems.AP1.MA0940.1.damo.bed EXP041211.apical_meristems.AP1.MA0940.1.damo.fa AP1 AGAMOUS-like 7|AGL7|APETALA1|AT1G69120|AtAP1|F4N2.9|F4N2_9|FLORAL HOMEOTIC PROTEIN APETALA1|K-box region and MADS-box transcription factor family protein EXP041213.apical_meristems.AP1 AP1 apical meristems control GEO:GSE20176|GEO:GSM506211|PUBMED:20360106|GTRD:EXP041213 Arabidopsis thaliana MA0940.1 EXP041213.apical_meristems.AP1.MA0940.1.damo.bed EXP041213.apical_meristems.AP1.MA0940.1.damo.fa AP1 AGAMOUS-like 7|AGL7|APETALA1|AT1G69120|AtAP1|F4N2.9|F4N2_9|FLORAL HOMEOTIC PROTEIN APETALA1|K-box region and MADS-box transcription factor family protein EXP041220.complete_15_day-old_seedlings.LFY LFY complete 15 day-old seedlings plants that overexpressed LFY (35S:LFY) GEO:GSM605656|GEO:GSE24568|PUBMED:21515819|GTRD:EXP041220 Arabidopsis thaliana MA0590.1 EXP041220.complete_15_day-old_seedlings.LFY.MA0590.1.damo.bed EXP041220.complete_15_day-old_seedlings.LFY.MA0590.1.damo.fa LFY AT5G61850|LEAFY|LEAFY 3|LFY3|MAC9.13|MAC9_13|floral meristem identity control protein LEAFY (LFY) EXP041221.complete_15_day-old_seedlings.LFY LFY complete 15 day-old seedlings plants that overexpressed LFY (35S:LFY) PUBMED:21515819|GEO:GSE24568|GEO:GSM605657|GTRD:EXP041221 Arabidopsis thaliana MA0590.1 EXP041221.complete_15_day-old_seedlings.LFY.MA0590.1.damo.bed EXP041221.complete_15_day-old_seedlings.LFY.MA0590.1.damo.fa LFY AT5G61850|LEAFY|LEAFY 3|LFY3|MAC9.13|MAC9_13|floral meristem identity control protein LEAFY (LFY) EXP041222.4_day_old_seedlings.FHY3 FHY3 4 day old seedlings Dark (35S:3FLAG-FHY3-3HA fhy3-4 transgenic line) GEO:GSM761689|GEO:GSE30711|PUBMED:21803941|GTRD:EXP041222 Arabidopsis thaliana MA0557.1 EXP041222.4_day_old_seedlings.FHY3.MA0557.1.damo.bed EXP041222.4_day_old_seedlings.FHY3.MA0557.1.damo.fa FHY3 AT3G22170|CHLOROPLAST DIVISION MUTANT 45|CPD45|far-red elongated hypocotyls 3 EXP041223.4_day_old_seedlings.FHY3 FHY3 4 day old seedlings Far-Red (35S:3FLAG-FHY3-3HA fhy3-4 transgenic line) GEO:GSE30711|GEO:GSM761690|PUBMED:21803941|GTRD:EXP041223 Arabidopsis thaliana MA0557.1 EXP041223.4_day_old_seedlings.FHY3.MA0557.1.damo.bed EXP041223.4_day_old_seedlings.FHY3.MA0557.1.damo.fa FHY3 AT3G22170|CHLOROPLAST DIVISION MUTANT 45|CPD45|far-red elongated hypocotyls 3 EXP041225.14_day_old_seedling.PIF5 PIF5 14 day old seedling low R/FR light (PIF5-HA overexpressor Flag tagged) GEO:GSE35059|GEO:GSM861508|GTRD:EXP041225 Arabidopsis thaliana MA0562.1 EXP041225.14_day_old_seedling.PIF5.MA0562.1.damo.bed EXP041225.14_day_old_seedling.PIF5.MA0562.1.damo.fa PIF5 AT3G59060|PHYTOCHROME-INTERACTING FACTOR 5|PIF5|phytochrome interacting factor 3-like 6 EXP041226.complete_seedlings.PIF4 PIF4 complete seedlings genotype: pPIF4::PIF4-myc (grown in the dark for 5 days) GEO:GSM865709|GEO:GSE35315|GTRD:EXP041226 Arabidopsis thaliana MA0561.1 EXP041226.complete_seedlings.PIF4.MA0561.1.damo.bed EXP041226.complete_seedlings.PIF4.MA0561.1.damo.fa PIF4 AT2G43010|AtPIF4|MFL8.13|MFL8_13|SRL2|phytochrome interacting factor 4 EXP041239.floral_tissue.PI PI floral tissue PI-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers) PUBMED:22847437|GEO:GSE38358|GEO:GSM940585|GTRD:EXP041239 Arabidopsis thaliana MA0559.1 EXP041239.floral_tissue.PI.MA0559.1.damo.bed EXP041239.floral_tissue.PI.MA0559.1.damo.fa PI AT5G20240|F5O24.130|F5O24_130|FLORAL HOMEOTIC PROTEIN PISTILLATA|K-box region and MADS-box transcription factor family protein|PISTILLATA EXP041240.floral_tissue.AP3 AP3 floral tissue AP3-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers) GEO:GSM940586|GEO:GSE38358|PUBMED:22847437|GTRD:EXP041240 Arabidopsis thaliana MA0556.1 EXP041240.floral_tissue.AP3.MA0556.1.damo.bed EXP041240.floral_tissue.AP3.MA0556.1.damo.fa AP3 APETALA 3|AT3G54340|ATAP3|FLORAL HOMEOTIC PROTEIN APETALA 3|K-box region and MADS-box transcription factor family protein EXP041247.2_day_old_seedlings.PIF3 PIF3 2 day old seedlings true dark; pif3-3 genotype GEO:GSM958269|PUBMED:23382695|GEO:GSE39215|GEO:GSM958271|GEO:GSM958270|GEO:GSM958272|GTRD:EXP041247 Arabidopsis thaliana MA0560.1 EXP041247.2_day_old_seedlings.PIF3.MA0560.1.damo.bed EXP041247.2_day_old_seedlings.PIF3.MA0560.1.damo.fa PIF3 AT1G09530|F14J9.19|F14J9_19|PAP3|PHOTOCURRENT 1|PHYTOCHROME INTERACTING FACTOR 3|PHYTOCHROME-ASSOCIATED PROTEIN 3|POC1|phytochrome interacting factor 3|purple acid phosphatase 3 EXP041262.3_day_old_seedlings.PIF1 PIF1 3 day old seedlings Myc-epitope-tagged-PIF1 (P1M) GEO:GSM1059957|PUBMED:25122696|GEO:GSE43283|GTRD:EXP041262 Arabidopsis thaliana MA0552.1 EXP041262.3_day_old_seedlings.PIF1.MA0552.1.damo.bed EXP041262.3_day_old_seedlings.PIF1.MA0552.1.damo.fa PIF1 AT2G20180|PHY-INTERACTING FACTOR 1|PIF1|T2G17.2|T2G17_2|phytochrome interacting factor 3-like 5 EXP041263.3_day_old_seedlings.PIF1 PIF1 3 day old seedlings Myc-epitope-tagged-PIF1 (P1M) PUBMED:25122696|GEO:GSM1059958|GEO:GSE43283|GTRD:EXP041263 Arabidopsis thaliana MA0552.1 EXP041263.3_day_old_seedlings.PIF1.MA0552.1.damo.bed EXP041263.3_day_old_seedlings.PIF1.MA0552.1.damo.fa PIF1 AT2G20180|PHY-INTERACTING FACTOR 1|PIF1|T2G17.2|T2G17_2|phytochrome interacting factor 3-like 5 EXP041264.3_day_old_seedlings.PIF1 PIF1 3 day old seedlings Myc-epitope-tagged-PIF1 (P1M) PUBMED:25122696|GEO:GSM1059959|GEO:GSE43283|GTRD:EXP041264 Arabidopsis thaliana MA0552.1 EXP041264.3_day_old_seedlings.PIF1.MA0552.1.damo.bed EXP041264.3_day_old_seedlings.PIF1.MA0552.1.damo.fa PIF1 AT2G20180|PHY-INTERACTING FACTOR 1|PIF1|T2G17.2|T2G17_2|phytochrome interacting factor 3-like 5 EXP041270.3_day_old_seedlings.PIF4 PIF4 3 day old seedlings Myc-epitope-tagged-PIF4 (P1M) PUBMED:25122696|GEO:GSM1059965|GEO:GSE43284|GTRD:EXP041270 Arabidopsis thaliana MA0561.1 EXP041270.3_day_old_seedlings.PIF4.MA0561.1.damo.bed EXP041270.3_day_old_seedlings.PIF4.MA0561.1.damo.fa PIF4 AT2G43010|AtPIF4|MFL8.13|MFL8_13|SRL2|phytochrome interacting factor 4 EXP041276.inflorescence.AG AG inflorescence AG-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers) PUBMED:23821642|GEO:GSE45938|GEO:GSM1120015|GEO:GSM1120014|GTRD:EXP041276 Arabidopsis thaliana MA0005.2 EXP041276.inflorescence.AG.MA0005.2.damo.bed EXP041276.inflorescence.AG.MA0005.2.damo.fa AG AGAMOUS|AGAMOUS PROTEIN|AT4G18960|F13C5.130|F13C5_130|K-box region and MADS-box transcription factor family protein EXP041280.inflorescence.SEP3 SEP3 inflorescence 4 days after DEX GEO:GSM1142624|PUBMED:24581456|GEO:GSE46986|GTRD:EXP041280 Arabidopsis thaliana MA0563.1 EXP041280.inflorescence.SEP3.MA0563.1.damo.bed EXP041280.inflorescence.SEP3.MA0563.1.damo.fa SEP3 AGAMOUS-like 9|AGL9|AT1G24260|F3I6.19|F3I6_19|K-box region and MADS-box transcription factor family protein|SEPALLATA3|TRANSCRIPTION FACTOR AGL9 EXP041281.inflorescence.SEP3 SEP3 inflorescence 8 days after DEX GEO:GSE46986|GEO:GSM1142625|PUBMED:24581456|GTRD:EXP041281 Arabidopsis thaliana MA0563.1 EXP041281.inflorescence.SEP3.MA0563.1.damo.bed EXP041281.inflorescence.SEP3.MA0563.1.damo.fa SEP3 AGAMOUS-like 9|AGL9|AT1G24260|F3I6.19|F3I6_19|K-box region and MADS-box transcription factor family protein|SEPALLATA3|TRANSCRIPTION FACTOR AGL9 EXP041282.inflorescence.AP1 AP1 inflorescence 4 days after DEX GEO:GSE46986|GEO:GSM1142627|PUBMED:24581456|GTRD:EXP041282 Arabidopsis thaliana MA0940.1 EXP041282.inflorescence.AP1.MA0940.1.damo.bed EXP041282.inflorescence.AP1.MA0940.1.damo.fa AP1 AGAMOUS-like 7|AGL7|APETALA1|AT1G69120|AtAP1|F4N2.9|F4N2_9|FLORAL HOMEOTIC PROTEIN APETALA1|K-box region and MADS-box transcription factor family protein EXP041283.inflorescence.AP1 AP1 inflorescence 8 days after DEX PUBMED:24581456|GEO:GSE46986|GEO:GSM1142628|GTRD:EXP041283 Arabidopsis thaliana MA0940.1 EXP041283.inflorescence.AP1.MA0940.1.damo.bed EXP041283.inflorescence.AP1.MA0940.1.damo.fa AP1 AGAMOUS-like 7|AGL7|APETALA1|AT1G69120|AtAP1|F4N2.9|F4N2_9|FLORAL HOMEOTIC PROTEIN APETALA1|K-box region and MADS-box transcription factor family protein EXP041285.inflorescence.SEP3 SEP3 inflorescence 2 days after DEX GEO:GSM1279838|GEO:GSM1279839|PUBMED:24581456|GEO:GSE46986|GTRD:EXP041285 Arabidopsis thaliana MA0563.1 EXP041285.inflorescence.SEP3.MA0563.1.damo.bed EXP041285.inflorescence.SEP3.MA0563.1.damo.fa SEP3 AGAMOUS-like 9|AGL9|AT1G24260|F3I6.19|F3I6_19|K-box region and MADS-box transcription factor family protein|SEPALLATA3|TRANSCRIPTION FACTOR AGL9 EXP041287.10_day_old_seedlings.KAN1 KAN1 10 day old seedlings 45 minutes DEX treatment GEO:GSE48081|GEO:GSM1167537|PUBMED:24155946|GEO:GSM1167539|GTRD:EXP041287 Arabidopsis thaliana MA1027.1 EXP041287.10_day_old_seedlings.KAN1.MA1027.1.damo.bed EXP041287.10_day_old_seedlings.KAN1.MA1027.1.damo.fa KAN1 AT5G16560|Homeodomain-like superfamily protein|KAN1|KANADI|KANADI 1|MQK4.31|MQK4_31 EXP041291.seedling.AGL27 AGL27 seedling GEO:GSM1167549|PUBMED:24067612|GEO:GSM1167552|GEO:GSM1167551|GEO:GSE48082|GTRD:EXP041291 Arabidopsis thaliana MA1012.1 EXP041291.seedling.AGL27.MA1012.1.damo.bed EXP041291.seedling.AGL27.MA1012.1.damo.fa AGL27 AGAMOUS-like 27|AGL27|AT1G77080|FLM|FLOWERING LOCUS M|K-box region and MADS-box transcription factor family protein|MADS AFFECTING FLOWERING 1 EXP041292.seedling.AGL27 AGL27 seedling iFLM-beta splicing variant GEO:GSE48082|GEO:GSM1167541|PUBMED:24067612|GEO:GSM1167547|GTRD:EXP041292 Arabidopsis thaliana MA1012.1 EXP041292.seedling.AGL27.MA1012.1.damo.bed EXP041292.seedling.AGL27.MA1012.1.damo.fa AGL27 AGAMOUS-like 27|AGL27|AT1G77080|FLM|FLOWERING LOCUS M|K-box region and MADS-box transcription factor family protein|MADS AFFECTING FLOWERING 1 EXP041317.PSB-d_dark_growing_suspension_cells.E2FA E2FA PSB-d dark growing suspension cells GEO:GSM1291187|PUBMED:24453163|GEO:GSE53422|GTRD:EXP041317 Arabidopsis thaliana MA1414.1 EXP041317.PSB-d_dark_growing_suspension_cells.E2FA.MA1414.1.damo.bed EXP041317.PSB-d_dark_growing_suspension_cells.E2FA.MA1414.1.damo.fa E2FA AT2G36010|ATE2FA|E2F TRANSCRIPTION FACTOR-3 E2F3|E2F transcription factor 3|F11F19.8|F11F19_8 EXP041354.complete_15_day-old_seedlings.LFY LFY complete 15 day-old seedlings p35S:LFY; CA26-15 strain GEO:GSM1566965|GEO:GSE64245|PUBMED:27097556|GEO:GSM1566964|GTRD:EXP041354 Arabidopsis thaliana MA0590.1 EXP041354.complete_15_day-old_seedlings.LFY.MA0590.1.damo.bed EXP041354.complete_15_day-old_seedlings.LFY.MA0590.1.damo.fa LFY AT5G61850|LEAFY|LEAFY 3|LFY3|MAC9.13|MAC9_13|floral meristem identity control protein LEAFY (LFY) EXP041355.complete_15_day-old_seedlings.LFY LFY complete 15 day-old seedlings p35S:LFYTERE; CA29-17 strain GEO:GSM1566966|GEO:GSE64245|GEO:GSM1566967|PUBMED:27097556|GTRD:EXP041355 Arabidopsis thaliana MA0590.1 EXP041355.complete_15_day-old_seedlings.LFY.MA0590.1.damo.bed EXP041355.complete_15_day-old_seedlings.LFY.MA0590.1.damo.fa LFY AT5G61850|LEAFY|LEAFY 3|LFY3|MAC9.13|MAC9_13|floral meristem identity control protein LEAFY (LFY) EXP041357.12_day_old_seedlings.REF6 REF6 12 day old seedlings REF6p::REF6-HA ref6-1 GEO:GSE65329|PUBMED:27111035|GEO:GSM1592577|GTRD:EXP041357 Arabidopsis thaliana MA1415.1 EXP041357.12_day_old_seedlings.REF6.MA1415.1.damo.bed EXP041357.12_day_old_seedlings.REF6.MA1415.1.damo.fa REF6 AT3G48430|JMJ12|Jumonji domain-containing protein 12|relative of early flowering 6 EXP041366.4_week_old_mature_leaves.WRKY33 WRKY33 4 week old mature leaves 14 hour post inoculation with spores of Botrytis cinerea 2100 GEO:GSM1618745|PUBMED:26076231|GEO:GSE66289|GEO:GSM1618746|GTRD:EXP041366 Arabidopsis thaliana MA1301.1 EXP041366.4_week_old_mature_leaves.WRKY33.MA1301.1.damo.bed EXP041366.4_week_old_mature_leaves.WRKY33.MA1301.1.damo.fa WRKY33 AT2G38470|ATWRKY33|T19C21.4|T19C21_4|WRKY DNA-BINDING PROTEIN 33|WRKY DNA-binding protein 33 EXP041373.5_day_old_seedlings.PIF4 PIF4 5 day old seedlings 5 day white light, low blue for 16 hours GEO:GSE68193|PUBMED:26724867|GEO:GSM1665427|GEO:GSM1665428|GEO:GSM1665429|GTRD:EXP041373 Arabidopsis thaliana MA0561.1 EXP041373.5_day_old_seedlings.PIF4.MA0561.1.damo.bed EXP041373.5_day_old_seedlings.PIF4.MA0561.1.damo.fa PIF4 AT2G43010|AtPIF4|MFL8.13|MFL8_13|SRL2|phytochrome interacting factor 4 EXP041374.5_day_old_seedlings.PIF5 PIF5 5 day old seedlings 5 day white light, low blue for 16 hours GEO:GSM1977462|GEO:GSE68193|PUBMED:26724867|GEO:GSM1977463|GTRD:EXP041374 Arabidopsis thaliana MA0562.1 EXP041374.5_day_old_seedlings.PIF5.MA0562.1.damo.bed EXP041374.5_day_old_seedlings.PIF5.MA0562.1.damo.fa PIF5 AT3G59060|PHYTOCHROME-INTERACTING FACTOR 5|PIF5|phytochrome interacting factor 3-like 6 EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3 FHY3 Inflorescence containing stage 8 and younger flowers GEO:GSE69422|GEO:GSM1701005|PUBMED:27469166|GEO:GSM1701006|GTRD:EXP041376 Arabidopsis thaliana MA0557.1 EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3.MA0557.1.damo.bed EXP041376.Inflorescence_containing_stage_8_and_younger_flowers.FHY3.MA0557.1.damo.fa FHY3 AT3G22170|CHLOROPLAST DIVISION MUTANT 45|CPD45|far-red elongated hypocotyls 3 EXP041386.14_day_old_seedling.CCA1 CCA1 14 day old seedling Constant Light after entrainment in 12h:12h Light: Dark; ZT2 GEO:GSM1808449|GEO:GSM1808450|PUBMED:26261339|GEO:GSE70533|GEO:GSM1808451|GTRD:EXP041386 Arabidopsis thaliana MA0972.1 EXP041386.14_day_old_seedling.CCA1.MA0972.1.damo.bed EXP041386.14_day_old_seedling.CCA1.MA0972.1.damo.fa CCA1 AT2G46830|AtCCA1|F19D11.11|MYB-RELATED DNA BINDING PROTEIN|circadian clock associated 1 EXP041387.14_day_old_seedling.CCA1 CCA1 14 day old seedling Diel 12h:12h Light:Dark; ZT2 PUBMED:26261339|GEO:GSM1808452|GEO:GSM1808453|GEO:GSE70533|GTRD:EXP041387 Arabidopsis thaliana MA0972.1 EXP041387.14_day_old_seedling.CCA1.MA0972.1.damo.bed EXP041387.14_day_old_seedling.CCA1.MA0972.1.damo.fa CCA1 AT2G46830|AtCCA1|F19D11.11|MYB-RELATED DNA BINDING PROTEIN|circadian clock associated 1 EXP041391.transition_apices.SOC1 SOC1 transition apices SOC1p:gSOC1-GFP;soc1-2; 15 days SD + 3 days LD GEO:GSM1116506|PUBMED:22791302|GEO:GSE45846|GTRD:EXP041391 Arabidopsis thaliana MA0554.1 EXP041391.transition_apices.SOC1.MA0554.1.damo.bed EXP041391.transition_apices.SOC1.MA0554.1.damo.fa SOC1 AGAMOUS-like 20|AT2G45660|ATSOC1|F17K2.19|MADS-BOX PROTEIN AGL20|SOC1|SUPPRESSOR OF OVEREXPRESSION OF CO 1 EXP041392.transition_apices.SOC1 SOC1 transition apices SOC1p:gSOC1-GFP;soc1-2; 15 days SD + 3 days LD PUBMED:22791302|GEO:GSE45846|GEO:GSM1116508|GTRD:EXP041392 Arabidopsis thaliana MA0554.1 EXP041392.transition_apices.SOC1.MA0554.1.damo.bed EXP041392.transition_apices.SOC1.MA0554.1.damo.fa SOC1 AGAMOUS-like 20|AT2G45660|ATSOC1|F17K2.19|MADS-BOX PROTEIN AGL20|SOC1|SUPPRESSOR OF OVEREXPRESSION OF CO 1 EXP041393.transition_apices.SOC1 SOC1 transition apices SOC1p:gSOC1-GFP;soc1-2; 15 days SD + 3 days LD GEO:GSM1116510|GEO:GSE45846|PUBMED:22791302|GTRD:EXP041393 Arabidopsis thaliana MA0554.1 EXP041393.transition_apices.SOC1.MA0554.1.damo.bed EXP041393.transition_apices.SOC1.MA0554.1.damo.fa SOC1 AGAMOUS-like 20|AT2G45660|ATSOC1|F17K2.19|MADS-BOX PROTEIN AGL20|SOC1|SUPPRESSOR OF OVEREXPRESSION OF CO 1 EXP041415.3_day_old_seedlings.ABF3 ABF3 3 day old seedlings EtOH mock treatment, 4 hours; dark GEO:GSM2130978|GEO:GSM2130980|GEO:GSE80564|PUBMED:27811239|GEO:GSM2130976|GTRD:EXP041415 Arabidopsis thaliana MA0930.1 EXP041415.3_day_old_seedlings.ABF3.MA0930.1.damo.bed EXP041415.3_day_old_seedlings.ABF3.MA0930.1.damo.fa ABF3 AT4G34000|AtABF3|DC3 PROMOTER-BINDING FACTOR 5|DPBF5|F17I5.200|abscisic acid responsive elements-binding factor 3 EXP041416.3_day_old_seedlings.ABF3 ABF3 3 day old seedlings 10 uM abscisic acid, 4 hours; dark GEO:GSM2130979|PUBMED:27811239|GEO:GSM2130977|GEO:GSM2130975|GEO:GSE80564|GTRD:EXP041416 Arabidopsis thaliana MA0930.1 EXP041416.3_day_old_seedlings.ABF3.MA0930.1.damo.bed EXP041416.3_day_old_seedlings.ABF3.MA0930.1.damo.fa ABF3 AT4G34000|AtABF3|DC3 PROMOTER-BINDING FACTOR 5|DPBF5|F17I5.200|abscisic acid responsive elements-binding factor 3 EXP041417.3_day_old_seedlings.ABF4 ABF4 3 day old seedlings EtOH mock treatment, 4 hours; dark GEO:GSM2130974|PUBMED:27811239|GEO:GSE80564|GEO:GSM2130972|GEO:GSM2130970|GTRD:EXP041417 Arabidopsis thaliana MA1659.1 EXP041417.3_day_old_seedlings.ABF4.MA1659.1.damo.bed EXP041417.3_day_old_seedlings.ABF4.MA1659.1.damo.fa ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2|ABRE binding factor 4|AREB2|AT3G19290|AtAREB2|MVI11.7 EXP041418.3_day_old_seedlings.ABF4 ABF4 3 day old seedlings 10 uM abscisic acid, 4 hours; dark GEO:GSM2130973|PUBMED:27811239|GEO:GSM2130971|GEO:GSE80564|GEO:GSM2130969|GTRD:EXP041418 Arabidopsis thaliana MA1659.1 EXP041418.3_day_old_seedlings.ABF4.MA1659.1.damo.bed EXP041418.3_day_old_seedlings.ABF4.MA1659.1.damo.fa ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2|ABRE binding factor 4|AREB2|AT3G19290|AtAREB2|MVI11.7 EXP041419.3_day_old_seedlings.ATHB-7 ATHB-7 3 day old seedlings EtOH mock treatment, 4 hours; dark GEO:GSE80564|GEO:GSM2130968|PUBMED:27811239|GEO:GSM2130964|GEO:GSM2130966|GTRD:EXP041419 Arabidopsis thaliana MA0954.2 EXP041419.3_day_old_seedlings.ATHB-7.MA0954.2.damo.bed EXP041419.3_day_old_seedlings.ATHB-7.MA0954.2.damo.fa ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7|AT2G46680|ATHB-7|ATHB7|T3A4.6|homeobox 7 EXP041420.3_day_old_seedlings.ATHB-7 ATHB-7 3 day old seedlings 10 uM abscisic acid, 4 hours; dark GEO:GSE80564|GEO:GSM2130967|GEO:GSM2130963|PUBMED:27811239|GEO:GSM2130965|GTRD:EXP041420 Arabidopsis thaliana MA0954.2 EXP041420.3_day_old_seedlings.ATHB-7.MA0954.2.damo.bed EXP041420.3_day_old_seedlings.ATHB-7.MA0954.2.damo.fa ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7|AT2G46680|ATHB-7|ATHB7|T3A4.6|homeobox 7 EXP041427.3_day_old_seedlings.ATHB-5 ATHB-5 3 day old seedlings EtOH mock treatment, 4 hours; dark GEO:GSM2130942|PUBMED:27811239|GEO:GSM2130944|GEO:GSE80564|GEO:GSM2130946|GTRD:EXP041427 Arabidopsis thaliana MA0110.3 EXP041427.3_day_old_seedlings.ATHB-5.MA0110.3.damo.bed EXP041427.3_day_old_seedlings.ATHB-5.MA0110.3.damo.fa ATHB-5 AT5G65310|ATHB-5|ATHB5|MNA5.4|MNA5_4|homeobox protein 5 EXP041428.3_day_old_seedlings.ATHB-5 ATHB-5 3 day old seedlings 10 uM abscisic acid, 4 hours; dark GEO:GSM2130945|GEO:GSE80564|GEO:GSM2130943|PUBMED:27811239|GEO:GSM2130941|GTRD:EXP041428 Arabidopsis thaliana MA0110.3 EXP041428.3_day_old_seedlings.ATHB-5.MA0110.3.damo.bed EXP041428.3_day_old_seedlings.ATHB-5.MA0110.3.damo.fa ATHB-5 AT5G65310|ATHB-5|ATHB5|MNA5.4|MNA5_4|homeobox protein 5 EXP041437.3_day_old_seedlings.MYB3 MYB3 3 day old seedlings EtOH mock treatment, 4 hours; dark GEO:GSM2130916|GEO:GSM2130912|GEO:GSM2130914|PUBMED:27811239|GEO:GSE80564|GTRD:EXP041437 Arabidopsis thaliana MA1038.1 EXP041437.3_day_old_seedlings.MYB3.MA1038.1.damo.bed EXP041437.3_day_old_seedlings.MYB3.MA1038.1.damo.fa MYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3|ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3|AT1G22640|ATMYB3|T22J18.19|T22J18_19|TRANSCRIPTION FACTOR MYB3|myb domain protein 3 EXP041438.3_day_old_seedlings.MYB3 MYB3 3 day old seedlings 10 uM abscisic acid, 4 hours; dark GEO:GSE80564|GEO:GSM2130915|PUBMED:27811239|GEO:GSM2130913|GEO:GSM2130911|GTRD:EXP041438 Arabidopsis thaliana MA1038.1 EXP041438.3_day_old_seedlings.MYB3.MA1038.1.damo.bed EXP041438.3_day_old_seedlings.MYB3.MA1038.1.damo.fa MYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3|ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3|AT1G22640|ATMYB3|T22J18.19|T22J18_19|TRANSCRIPTION FACTOR MYB3|myb domain protein 3 EXP041441.3_day_old_seedlings.HAT22 HAT22 3 day old seedlings EtOH mock treatment, 4 hours; dark PUBMED:27811239|GEO:GSM2130900|GEO:GSM2130902|GEO:GSE80564|GEO:GSM2130904|GTRD:EXP041441 Arabidopsis thaliana MA1210.1 EXP041441.3_day_old_seedlings.HAT22.MA1210.1.damo.bed EXP041441.3_day_old_seedlings.HAT22.MA1210.1.damo.fa HAT22 AT4G37790|HOMEOBOX PROTEIN|Homeobox-leucine zipper protein family|T28I19.70|T28I19_70 EXP041442.3_day_old_seedlings.HAT22 HAT22 3 day old seedlings 10 uM abscisic acid, 4 hours; dark GEO:GSM2130901|GEO:GSM2130903|PUBMED:27811239|GEO:GSE80564|GEO:GSM2130899|GTRD:EXP041442 Arabidopsis thaliana MA1210.1 EXP041442.3_day_old_seedlings.HAT22.MA1210.1.damo.bed EXP041442.3_day_old_seedlings.HAT22.MA1210.1.damo.fa HAT22 AT4G37790|HOMEOBOX PROTEIN|Homeobox-leucine zipper protein family|T28I19.70|T28I19_70 EXP041443.3_day_old_seedlings.GBF2 GBF2 3 day old seedlings EtOH mock treatment, 4 hours; dark GEO:GSM2130896|PUBMED:27811239|GEO:GSE80564|GEO:GSM2130898|GEO:GSM2130894|GTRD:EXP041443 Arabidopsis thaliana MA1672.1 EXP041443.3_day_old_seedlings.GBF2.MA1672.1.damo.bed EXP041443.3_day_old_seedlings.GBF2.MA1672.1.damo.fa GBF2 AT4G01120|ATBZIP54|BASIC REGION/LEUCINE ZIPPER MOTIF 5|F2N1.12|F2N1_12|G-box binding factor 2 EXP041444.3_day_old_seedlings.GBF2 GBF2 3 day old seedlings 10 uM abscisic acid, 4 hours; dark GEO:GSM2130893|GEO:GSM2130897|PUBMED:27811239|GEO:GSM2130895|GEO:GSE80564|GTRD:EXP041444 Arabidopsis thaliana MA1672.1 EXP041444.3_day_old_seedlings.GBF2.MA1672.1.damo.bed EXP041444.3_day_old_seedlings.GBF2.MA1672.1.damo.fa GBF2 AT4G01120|ATBZIP54|BASIC REGION/LEUCINE ZIPPER MOTIF 5|F2N1.12|F2N1_12|G-box binding factor 2 EXP041451.3_day_old_seedlings.GBF3 GBF3 3 day old seedlings EtOH mock treatment, 4 hours; dark PUBMED:27811239|GEO:GSM2130876|GEO:GSM2130872|GEO:GSE80564|GEO:GSM2130874|GTRD:EXP041451 Arabidopsis thaliana MA1351.1 EXP041451.3_day_old_seedlings.GBF3.MA1351.1.damo.bed EXP041451.3_day_old_seedlings.GBF3.MA1351.1.damo.fa GBF3 AT1G13980|EMB30|EMBRYO DEFECTIVE 30|F16A14.20|GNOM|VAN7|VASCULAR NETWORK 7|sec7 domain-containing protein EXP041452.3_day_old_seedlings.GBF3 GBF3 3 day old seedlings 10 uM abscisic acid, 4 hours; dark PUBMED:27811239|GEO:GSE80564|GEO:GSM2130871|GEO:GSM2130875|GEO:GSM2130873|GTRD:EXP041452 Arabidopsis thaliana MA1351.1 EXP041452.3_day_old_seedlings.GBF3.MA1351.1.damo.bed EXP041452.3_day_old_seedlings.GBF3.MA1351.1.damo.fa GBF3 AT1G13980|EMB30|EMBRYO DEFECTIVE 30|F16A14.20|GNOM|VAN7|VASCULAR NETWORK 7|sec7 domain-containing protein EXP041453.3_day_old_seedlings.ABF1 ABF1 3 day old seedlings EtOH mock treatment, 4 hours; dark GEO:GSM2130866|GEO:GSM2130868|GEO:GSE80564|PUBMED:27811239|GEO:GSM2130870|GTRD:EXP041453 Arabidopsis thaliana MA0570.2 EXP041453.3_day_old_seedlings.ABF1.MA0570.2.damo.bed EXP041453.3_day_old_seedlings.ABF1.MA0570.2.damo.fa ABF1 AT1G49720|AtABF1|F14J22.7|F14J22_7|abscisic acid responsive element-binding factor 1 EXP041454.3_day_old_seedlings.ABF1 ABF1 3 day old seedlings 10 uM abscisic acid, 4 hours; dark GEO:GSE80564|PUBMED:27811239|GEO:GSM2130867|GEO:GSM2130865|GEO:GSM2130869|GTRD:EXP041454 Arabidopsis thaliana MA0570.2 EXP041454.3_day_old_seedlings.ABF1.MA0570.2.damo.bed EXP041454.3_day_old_seedlings.ABF1.MA0570.2.damo.fa ABF1 AT1G49720|AtABF1|F14J22.7|F14J22_7|abscisic acid responsive element-binding factor 1 EXP041469.12_day_old_seedlings.WRKY33 WRKY33 12 day old seedlings untreated GEO:GSE85922|PUBMED:28011690|GEO:GSM2287860|GTRD:EXP041469 Arabidopsis thaliana MA1301.1 EXP041469.12_day_old_seedlings.WRKY33.MA1301.1.damo.bed EXP041469.12_day_old_seedlings.WRKY33.MA1301.1.damo.fa WRKY33 AT2G38470|ATWRKY33|T19C21.4|T19C21_4|WRKY DNA-BINDING PROTEIN 33|WRKY DNA-binding protein 33 EXP041470.12_day_old_seedlings.WRKY33 WRKY33 12 day old seedlings flg22-treated PUBMED:28011690|GEO:GSM2287861|GEO:GSE85922|GTRD:EXP041470 Arabidopsis thaliana MA1301.1 EXP041470.12_day_old_seedlings.WRKY33.MA1301.1.damo.bed EXP041470.12_day_old_seedlings.WRKY33.MA1301.1.damo.fa WRKY33 AT2G38470|ATWRKY33|T19C21.4|T19C21_4|WRKY DNA-BINDING PROTEIN 33|WRKY DNA-binding protein 33 EXP041471.12_day_old_seedlings.WRKY18 WRKY18 12 day old seedlings untreated GEO:GSE85922|PUBMED:28011690|GEO:GSM2287862|GTRD:EXP041471 Arabidopsis thaliana MA1077.1 EXP041471.12_day_old_seedlings.WRKY18.MA1077.1.damo.bed EXP041471.12_day_old_seedlings.WRKY18.MA1077.1.damo.fa WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18|AT4G31800|ATWRKY18|F11C18.16|WRKY DNA-binding protein 18 EXP041472.12_day_old_seedlings.WRKY18 WRKY18 12 day old seedlings flg22-treated GEO:GSE85922|PUBMED:28011690|GEO:GSM2287863|GTRD:EXP041472 Arabidopsis thaliana MA1077.1 EXP041472.12_day_old_seedlings.WRKY18.MA1077.1.damo.bed EXP041472.12_day_old_seedlings.WRKY18.MA1077.1.damo.fa WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18|AT4G31800|ATWRKY18|F11C18.16|WRKY DNA-binding protein 18 EXP041474.12_day_old_seedlings.WRKY40 WRKY40 12 day old seedlings flg22-treated GEO:GSM2287865|GEO:GSE85922|PUBMED:28011690|GTRD:EXP041474 Arabidopsis thaliana MA1085.2 EXP041474.12_day_old_seedlings.WRKY40.MA1085.2.damo.bed EXP041474.12_day_old_seedlings.WRKY40.MA1085.2.damo.fa WRKY40 AT1G80840|ATWRKY40|F23A5.19|F23A5_19|WRKY DNA-binding protein 40 EXP041478.12_day_old_seedlings.WRKY18 WRKY18 12 day old seedlings flg22-treated GEO:GSM2287871|GEO:GSE85922|PUBMED:28011690|GTRD:EXP041478 Arabidopsis thaliana MA1077.1 EXP041478.12_day_old_seedlings.WRKY18.MA1077.1.damo.bed EXP041478.12_day_old_seedlings.WRKY18.MA1077.1.damo.fa WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18|AT4G31800|ATWRKY18|F11C18.16|WRKY DNA-binding protein 18 EXP041480.12_day_old_seedlings.WRKY40 WRKY40 12 day old seedlings flg22-treated GEO:GSE85922|PUBMED:28011690|GEO:GSM2287873|GTRD:EXP041480 Arabidopsis thaliana MA1085.2 EXP041480.12_day_old_seedlings.WRKY40.MA1085.2.damo.bed EXP041480.12_day_old_seedlings.WRKY40.MA1085.2.damo.fa WRKY40 AT1G80840|ATWRKY40|F23A5.19|F23A5_19|WRKY DNA-binding protein 40 EXP041484.above-ground_tissue.FLC FLC above-ground tissue Col FRI genotype GEO:GSM2392630|GEO:GSM2392632|PUBMED:29203652|GEO:GSE89889|GTRD:EXP041484 Arabidopsis thaliana MA0558.1 EXP041484.above-ground_tissue.FLC.MA0558.1.damo.bed EXP041484.above-ground_tissue.FLC.MA0558.1.damo.fa FLC EXP041523.inflorescence.LFY LFY inflorescence treatment with a solution containing 10 μM dexamethasone (Sigma-Aldrich), 0.01% (v/v) ethanol, and 0.015% (v/v) Silwet L-77 (De Sangosse). GEO:GSE96806|PUBMED:28385730|GEO:GSM2544348|GTRD:EXP041523 Arabidopsis thaliana MA0590.1 EXP041523.inflorescence.LFY.MA0590.1.damo.bed EXP041523.inflorescence.LFY.MA0590.1.damo.fa LFY AT5G61850|LEAFY|LEAFY 3|LFY3|MAC9.13|MAC9_13|floral meristem identity control protein LEAFY (LFY) EXP041541.14_day_old_seedling.REF6 REF6 14 day old seedling Plants were grown in 1/2MS media with 22 degree in 16h light/8h dark GEO:GSM1869290|PUBMED:27111034|GEO:GSE72735|GTRD:EXP041541 Arabidopsis thaliana MA1415.1 EXP041541.14_day_old_seedling.REF6.MA1415.1.damo.bed EXP041541.14_day_old_seedling.REF6.MA1415.1.damo.fa REF6 AT3G48430|JMJ12|Jumonji domain-containing protein 12|relative of early flowering 6 EXP041544.14_day_old_seedling.REF6 REF6 14 day old seedling brm-1; Plants were grown in 1/2MS media with 22 degree in 16h light/8h dark GEO:GSM1869296|PUBMED:27111034|GEO:GSE72735|GEO:GSM1869300|GTRD:EXP041544 Arabidopsis thaliana MA1415.1 EXP041544.14_day_old_seedling.REF6.MA1415.1.damo.bed EXP041544.14_day_old_seedling.REF6.MA1415.1.damo.fa REF6 AT3G48430|JMJ12|Jumonji domain-containing protein 12|relative of early flowering 6 EXP041545.14_day_old_seedling.REF6 REF6 14 day old seedling Plants were grown in 1/2MS media with 22 degree in 16h light/8h dark GEO:GSM1869295|PUBMED:27111034|GEO:GSM1869299|GEO:GSE72735|GTRD:EXP041545 Arabidopsis thaliana MA1415.1 EXP041545.14_day_old_seedling.REF6.MA1415.1.damo.bed EXP041545.14_day_old_seedling.REF6.MA1415.1.damo.fa REF6 AT3G48430|JMJ12|Jumonji domain-containing protein 12|relative of early flowering 6 EXP046633.whole_plants.HY5 HY5 whole plants Treatment: blue light treated; Ecotype: Ws; Genotype: HY5 mutant; GEO:GSM3309416|GEO:GSM3309417|GEO:GSM3309415|GEO:GSE117797|GTRD:EXP046633 Arabidopsis thaliana MA0551.1 EXP046633.whole_plants.HY5.MA0551.1.damo.bed EXP046633.whole_plants.HY5.MA0551.1.damo.fa HY5 AT5G11260|BZIP TRANSCRIPTION FACTOR HY5|Basic-leucine zipper (bZIP) transcription factor family protein|ELONGATED HYPOCOTYL 5|F2I11.150|F2I11_150|REVERSAL OF THE DET PHENOTYPE 5|TED 5 EXP046634.whole_plants.HY5 HY5 whole plants Treatment: red light treated; Ecotype: Ws; Genotype: HY5 mutant; GEO:GSM3309419|GEO:GSM3309418|GEO:GSM3309420|GEO:GSE117797|GTRD:EXP046634 Arabidopsis thaliana MA0551.1 EXP046634.whole_plants.HY5.MA0551.1.damo.bed EXP046634.whole_plants.HY5.MA0551.1.damo.fa HY5 AT5G11260|BZIP TRANSCRIPTION FACTOR HY5|Basic-leucine zipper (bZIP) transcription factor family protein|ELONGATED HYPOCOTYL 5|F2I11.150|F2I11_150|REVERSAL OF THE DET PHENOTYPE 5|TED 5 EXP046646.whole_3_days_seedings.ARR14 ARR14 whole 3 days seedings Treatment: 10uM 6BA, 4 hours on LS plates (Lightlong day); Tagline:ypet; Accession: ARR14ypet; GEO:GSE94486|GEO:GSM2476327|PUBMED:29686312|GTRD:EXP046646 Arabidopsis thaliana MA0947.1 EXP046646.whole_3_days_seedings.ARR14.MA0947.1.damo.bed EXP046646.whole_3_days_seedings.ARR14.MA0947.1.damo.fa ARR14 ARR14|AT2G01760|T8O11.7|T8O11_7|response regulator 14 EXP048500.flowers_5-week-old_plants.REF6 REF6 flowers, 5-week-old plants no DSG GEO:GSM2857897|GEO:GSM2857895|GEO:GSM2857896|GEO:GSE106942|PUBMED:30104650|GTRD:EXP048500 Arabidopsis thaliana MA1415.1 EXP048500.flowers_5-week-old_plants.REF6.MA1415.1.damo.bed EXP048500.flowers_5-week-old_plants.REF6.MA1415.1.damo.fa REF6 AT3G48430|JMJ12|Jumonji domain-containing protein 12|relative of early flowering 6 EXP048501.flowers_5-week-old_plants.REF6 REF6 flowers, 5-week-old plants DSG GEO:GSM2857900|GEO:GSM2857899|PUBMED:30104650|GEO:GSM2857898|GEO:GSE106942|GTRD:EXP048501 Arabidopsis thaliana MA1415.1 EXP048501.flowers_5-week-old_plants.REF6.MA1415.1.damo.bed EXP048501.flowers_5-week-old_plants.REF6.MA1415.1.damo.fa REF6 AT3G48430|JMJ12|Jumonji domain-containing protein 12|relative of early flowering 6 EXP052650.14_day_old_seedling.IDD4 IDD4 14 day old seedling Conditions: long-day conditions Treatment: 1uM flg22 treatment for 1 hour Genotype: ColO, pUBI10::IDD4:GFP GEO:GSE120068|GEO:GSM3392896|GTRD:EXP052650 Arabidopsis thaliana MA1371.1 EXP052650.14_day_old_seedling.IDD4.MA1371.1.damo.bed EXP052650.14_day_old_seedling.IDD4.MA1371.1.damo.fa IDD4 AT2G02080|AtIDD4|F5O4.15|F5O4_15|indeterminate(ID)-domain 4