folder tf_name title biological_condition identifier name jaspar_id bed_filename fasta_filename profile_name synonyms EXP040985.embryos_late_blastula.SOX2 SOX2 embryos, late blastula PUBMED:23950494|GEO:GSE39780|GEO:GSM978984|GTRD:EXP040985 Danio rerio MA0142.1 EXP040985.embryos_late_blastula.SOX2.MA0142.1.damo.bed EXP040985.embryos_late_blastula.SOX2.MA0142.1.damo.fa Pou5f1::Sox2 NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4|POU domain class 5 transcription factor 1 transcript variant 2 oct4b'|POU domain class 5 transcription factor 1 transcript variant 3 oct4b|POU domain, class 5, transcription factor 1|SRY (sex determining region Y)-box 2|SRY-box containing gene 2|Sox-2|lcc|octamer-binding protein 3|octamer-binding protein 4|octamer-binding transcription factor 3|octamer-binding transcription factor 4 alternative|transcription factor SOX-2|ysb EXP040985.embryos_late_blastula.SOX2 SOX2 embryos, late blastula PUBMED:23950494|GEO:GSE39780|GEO:GSM978984|GTRD:EXP040985 Danio rerio MA0143.4 EXP040985.embryos_late_blastula.SOX2.MA0143.4.damo.bed EXP040985.embryos_late_blastula.SOX2.MA0143.4.damo.fa SOX2 ANOP3|MCOPS3|SRY (sex determining region Y)-box 2|SRY-box 2|SRY-box transcription factor 2|SRY-related HMG-box gene 2|sex determining region Y-box 2|transcription factor SOX-2|transcription factor SOX2 EXP041000.10S_embryo.TBX6 TBX6 10S embryo GEO:GSM1379661|PUBMED:25725067|GEO:GSE57332|GTRD:EXP041000 Danio rerio MA1567.1 EXP041000.10S_embryo.TBX6.MA1567.1.damo.bed EXP041000.10S_embryo.TBX6.MA1567.1.damo.fa TBX6 SCDO5|T-box 6|T-box protein 6|T-box transcription factor 6|T-box transcription factor TBX6 EXP041005.4_5_hpf_embryo.FOXH1 FOXH1 4.5 hpf embryo none GEO:GSE67648|PUBMED:25869585|GEO:GSM1652663|GTRD:EXP041005 Danio rerio MA0479.1 EXP041005.4_5_hpf_embryo.FOXH1.MA0479.1.damo.bed EXP041005.4_5_hpf_embryo.FOXH1.MA0479.1.damo.fa FOXH1 FAST-1|FAST1|TGF-beta/activin signal transducer|fast-2|forkhead activin signal transducer 2|forkhead activin signal transducer-1|forkhead box H1|forkhead box protein H1|hFAST-1 EXP041006.4_5_hpf_embryo.FOXH1 FOXH1 4.5 hpf embryo Squint injection GEO:GSM1652664|PUBMED:25869585|GEO:GSE67648|GTRD:EXP041006 Danio rerio MA0479.1 EXP041006.4_5_hpf_embryo.FOXH1.MA0479.1.damo.bed EXP041006.4_5_hpf_embryo.FOXH1.MA0479.1.damo.fa FOXH1 FAST-1|FAST1|TGF-beta/activin signal transducer|fast-2|forkhead activin signal transducer 2|forkhead activin signal transducer-1|forkhead box H1|forkhead box protein H1|hFAST-1 EXP041020.10_hpf_embryo_bud_stage.CTCF CTCF 10 hpf embryo (bud stage) GEO:GSE84600|PUBMED:29158440|GEO:GSM2242561|GEO:GSM2242562|GTRD:EXP041020 Danio rerio MA0139.1 EXP041020.10_hpf_embryo_bud_stage.CTCF.MA0139.1.damo.bed EXP041020.10_hpf_embryo_bud_stage.CTCF.MA0139.1.damo.fa CTCF 11 zinc finger transcriptional repressor|11-zinc finger protein|CCCTC-binding factor|CCCTC-binding factor (zinc finger protein)|CFAP108|CTCFL paralog|FAP108|MRD21|transcriptional repressor CTCF EXP041072.10_hpf_embryo_bud_stage.CDX4 CDX4 10 hpf embryo (bud stage) PUBMED:24286030|GEO:GSE48254|GEO:GSM1173379|GTRD:EXP041072 Danio rerio MA1473.1 EXP041072.10_hpf_embryo_bud_stage.CDX4.MA1473.1.damo.bed EXP041072.10_hpf_embryo_bud_stage.CDX4.MA1473.1.damo.fa CDX4 caudal type homeobox 4|caudal type homeobox transcription factor 4|caudal-type homeobox protein 4|homeobox protein CDX-4