Specific Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json
, jsonp
, yaml
,
bed
, and also api
for a browsable interface.
GET /api/v1/specific/?collection=Robust&format=api&q=ESC&summary=true
https://unibind.uio.no/api/v1/specific/?collection=Robust&format=api&page=2&q=ESC&summary=true", "previous": null, "results": [ { "folder": { "folder": "EXP037001.hippocampal_neural_stem_cells.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "hippocampal neural stem cells" }, "biological_condition": "quiescence" } ], "references": [ { "identifier": "PUBMED:27819263" }, { "identifier": "GEO:GSM1816596" }, { "identifier": "GEO:GSE70695" }, { "identifier": "GTRD:EXP037001" } ], "species": { "name": "Rattus norvegicus" } }, "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037001.hippocampal_neural_stem_cells.REST/EXP037001.hippocampal_neural_stem_cells.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037001.hippocampal_neural_stem_cells.REST/EXP037001.hippocampal_neural_stem_cells.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] }, { "folder": { "folder": "EXP037002.hippocampal_neural_stem_cells.REST", "tf_name": "REST", "samples": [ { "cell": { "title": "hippocampal neural stem cells" }, "biological_condition": "quiescence" } ], "references": [ { "identifier": "GEO:GSM1816597" }, { "identifier": "PUBMED:27819263" }, { "identifier": "GEO:GSE70695" }, { "identifier": "GTRD:EXP037002" } ], "species": { "name": "Rattus norvegicus" } }, "jaspar_id": "MA0138.2", "bed_filename": "macs/DAMO/EXP037002.hippocampal_neural_stem_cells.REST/EXP037002.hippocampal_neural_stem_cells.REST.MA0138.2.damo.bed", "fasta_filename": "macs/DAMO/EXP037002.hippocampal_neural_stem_cells.REST/EXP037002.hippocampal_neural_stem_cells.REST.MA0138.2.damo.fa", "profile_name": "REST", "synonyms": [ "DFNA27", "GINGF5", "HGF5", "NRSF", "RE1 silencing transcription factor", "RE1-silencing transcription factor", "WT6", "XBR", "neural-restrictive silencer factor", "neuron restrictive silencer factor", "repressor binding to the X2 box" ] }, { "folder": { "folder": "EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "haploid mESCs derived from strain 129/Ola" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM2123546" }, { "identifier": "PUBMED:28289288" }, { "identifier": "GEO:GSE80280" }, { "identifier": "GTRD:EXP037346" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF/EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF/EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] }, { "folder": { "folder": "EXP038999.embryonic_stem_cells.PRDM15", "tf_name": "PRDM15", "samples": [ { "cell": { "title": "embryonic stem cells" }, "biological_condition": "ESCs medium (+Lif)" } ], "references": [ { "identifier": "PUBMED:28740264" }, { "identifier": "GEO:GSE73692" }, { "identifier": "GEO:GSM1900990" }, { "identifier": "GTRD:EXP038999" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA1616.1", "bed_filename": "macs/DAMO/EXP038999.embryonic_stem_cells.PRDM15/EXP038999.embryonic_stem_cells.PRDM15.MA1616.1.damo.bed", "fasta_filename": "macs/DAMO/EXP038999.embryonic_stem_cells.PRDM15/EXP038999.embryonic_stem_cells.PRDM15.MA1616.1.damo.fa", "profile_name": "Prdm15", "synonyms": [ "C21orf83", "E130018M06Rik", "ORF62", "PR domain containing 15", "PR domain zinc finger protein 15", "PR domain-containing protein 15", "Zfp298", "zinc finger protein 298" ] }, { "folder": { "folder": "EXP039000.embryonic_stem_cells.PRDM15", "tf_name": "PRDM15", "samples": [ { "cell": { "title": "embryonic stem cells" }, "biological_condition": "ESCs medium (+Lif) and 2i; Prdm15KO" } ], "references": [ { "identifier": "GEO:GSM2587045" }, { "identifier": "PUBMED:28740264" }, { "identifier": "GEO:GSE73692" }, { "identifier": "GEO:GSM2587044" }, { "identifier": "GTRD:EXP039000" } ], "species": { "name": "Mus musculus" } }, "jaspar_id": "MA1616.1", "bed_filename": "macs/DAMO/EXP039000.embryonic_stem_cells.PRDM15/EXP039000.embryonic_stem_cells.PRDM15.MA1616.1.damo.bed", "fasta_filename": "macs/DAMO/EXP039000.embryonic_stem_cells.PRDM15/EXP039000.embryonic_stem_cells.PRDM15.MA1616.1.damo.fa", "profile_name": "Prdm15", "synonyms": [ "C21orf83", "E130018M06Rik", "ORF62", "PR domain containing 15", "PR domain zinc finger protein 15", "PR domain-containing protein 15", "Zfp298", "zinc finger protein 298" ] }, { "folder": { "folder": "EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence meristems and floral buds (5-7 weeks)" }, "biological_condition": "wild type" } ], "references": [ { "identifier": "PUBMED:19385720" }, { "identifier": "GEO:GSE14600" }, { "identifier": "GEO:GSM364939" }, { "identifier": "GTRD:EXP041202" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041202.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] }, { "folder": { "folder": "EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence meristems and floral buds (5-7 weeks)" }, "biological_condition": "wild type" } ], "references": [ { "identifier": "GEO:GSE14600" }, { "identifier": "GEO:GSM364940" }, { "identifier": "PUBMED:19385720" }, { "identifier": "GTRD:EXP041203" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041203.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] }, { "folder": { "folder": "EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence meristems and floral buds (5-7 weeks)" }, "biological_condition": "wild type" } ], "references": [ { "identifier": "GEO:GSE14600" }, { "identifier": "PUBMED:19385720" }, { "identifier": "GEO:GSM364942" }, { "identifier": "GTRD:EXP041205" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041205.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] }, { "folder": { "folder": "EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3", "tf_name": "SEP3", "samples": [ { "cell": { "title": "inflorescence meristems and floral buds (5-7 weeks)" }, "biological_condition": "agamous mutant (ag-1)" } ], "references": [ { "identifier": "GEO:GSE14600" }, { "identifier": "PUBMED:19385720" }, { "identifier": "GEO:GSM364943" }, { "identifier": "GTRD:EXP041206" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0563.1", "bed_filename": "macs/DAMO/EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3/EXP041206.inflorescence_meristems_and_floral_buds_5-7_weeks.SEP3.MA0563.1.damo.fa", "profile_name": "SEP3", "synonyms": [ "AGAMOUS-like 9", "AGL9", "AT1G24260", "F3I6.19", "F3I6_19", "K-box region and MADS-box transcription factor family protein", "SEPALLATA3", "TRANSCRIPTION FACTOR AGL9" ] }, { "folder": { "folder": "EXP041276.inflorescence.AG", "tf_name": "AG", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "AG-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers)" } ], "references": [ { "identifier": "PUBMED:23821642" }, { "identifier": "GEO:GSE45938" }, { "identifier": "GEO:GSM1120015" }, { "identifier": "GEO:GSM1120014" }, { "identifier": "GTRD:EXP041276" } ], "species": { "name": "Arabidopsis thaliana" } }, "jaspar_id": "MA0005.2", "bed_filename": "macs/DAMO/EXP041276.inflorescence.AG/EXP041276.inflorescence.AG.MA0005.2.damo.bed", "fasta_filename": "macs/DAMO/EXP041276.inflorescence.AG/EXP041276.inflorescence.AG.MA0005.2.damo.fa", "profile_name": "AG", "synonyms": [ "AGAMOUS", "AGAMOUS PROTEIN", "AT4G18960", "F13C5.130", "F13C5_130", "K-box region and MADS-box transcription factor family protein" ] } ] }{ "count": 69, "next": "