Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&q=ESC&summary=true
{ "count": 51, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=2&q=ESC&summary=true", "previous": null, "results": [ { "folder": "EXP041276.inflorescence.AG", "tf_name": "AG", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "AG-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers)" } ], "references": [ { "identifier": "PUBMED:23821642" }, { "identifier": "GEO:GSE45938" }, { "identifier": "GEO:GSM1120015" }, { "identifier": "GEO:GSM1120014" }, { "identifier": "GTRD:EXP041276" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0005.2", "bed_filename": "macs/DAMO/EXP041276.inflorescence.AG/EXP041276.inflorescence.AG.MA0005.2.damo.bed", "fasta_filename": "macs/DAMO/EXP041276.inflorescence.AG/EXP041276.inflorescence.AG.MA0005.2.damo.fa", "profile_name": "AG", "synonyms": [ "AGAMOUS", "AGAMOUS PROTEIN", "AT4G18960", "F13C5.130", "F13C5_130", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP041282.inflorescence.AP1", "tf_name": "AP1", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "4 days after DEX" } ], "references": [ { "identifier": "GEO:GSE46986" }, { "identifier": "GEO:GSM1142627" }, { "identifier": "PUBMED:24581456" }, { "identifier": "GTRD:EXP041282" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0940.1", "bed_filename": "macs/DAMO/EXP041282.inflorescence.AP1/EXP041282.inflorescence.AP1.MA0940.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041282.inflorescence.AP1/EXP041282.inflorescence.AP1.MA0940.1.damo.fa", "profile_name": "AP1", "synonyms": [ "AGAMOUS-like 7", "AGL7", "APETALA1", "AT1G69120", "AtAP1", "F4N2.9", "F4N2_9", "FLORAL HOMEOTIC PROTEIN APETALA1", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP041283.inflorescence.AP1", "tf_name": "AP1", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "8 days after DEX" } ], "references": [ { "identifier": "PUBMED:24581456" }, { "identifier": "GEO:GSE46986" }, { "identifier": "GEO:GSM1142628" }, { "identifier": "GTRD:EXP041283" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0940.1", "bed_filename": "macs/DAMO/EXP041283.inflorescence.AP1/EXP041283.inflorescence.AP1.MA0940.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041283.inflorescence.AP1/EXP041283.inflorescence.AP1.MA0940.1.damo.fa", "profile_name": "AP1", "synonyms": [ "AGAMOUS-like 7", "AGL7", "APETALA1", "AT1G69120", "AtAP1", "F4N2.9", "F4N2_9", "FLORAL HOMEOTIC PROTEIN APETALA1", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "haploid mESCs derived from strain 129/Ola" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM2123546" }, { "identifier": "PUBMED:28289288" }, { "identifier": "GEO:GSE80280" }, { "identifier": "GTRD:EXP037346" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF/EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF/EXP037346.haploid_mESCs_derived_from_strain_129Ola.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] } ] }, { "folder": "EXP058913.mESCs_mouse_embryonic_stem_cells.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "mESCs (mouse embryonic stem cells)" }, "biological_condition": "Genotype: TET1/2 double knockout;" } ], "references": [ { "identifier": "GEO:GSM3145752" }, { "identifier": "GEO:GSE114599" }, { "identifier": "GTRD:EXP058913" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/EXP058913.mESCs_mouse_embryonic_stem_cells.CTCF/EXP058913.mESCs_mouse_embryonic_stem_cells.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/EXP058913.mESCs_mouse_embryonic_stem_cells.CTCF/EXP058913.mESCs_mouse_embryonic_stem_cells.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] } ] }, { "folder": "EXP058914.mESCs_mouse_embryonic_stem_cells.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "mESCs (mouse embryonic stem cells)" }, "biological_condition": "Genotype: TET1/2 double knockout;" } ], "references": [ { "identifier": "GEO:GSE114599" }, { "identifier": "GEO:GSM3145753" }, { "identifier": "GTRD:EXP058914" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/EXP058914.mESCs_mouse_embryonic_stem_cells.CTCF/EXP058914.mESCs_mouse_embryonic_stem_cells.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/EXP058914.mESCs_mouse_embryonic_stem_cells.CTCF/EXP058914.mESCs_mouse_embryonic_stem_cells.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] } ] }, { "folder": "EXP058915.mESCs_mouse_embryonic_stem_cells.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "mESCs (mouse embryonic stem cells)" }, "biological_condition": "Genotype: wildtype;" } ], "references": [ { "identifier": "GEO:GSM3145754" }, { "identifier": "GEO:GSE114599" }, { "identifier": "GTRD:EXP058915" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/EXP058915.mESCs_mouse_embryonic_stem_cells.CTCF/EXP058915.mESCs_mouse_embryonic_stem_cells.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/EXP058915.mESCs_mouse_embryonic_stem_cells.CTCF/EXP058915.mESCs_mouse_embryonic_stem_cells.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] } ] }, { "folder": "EXP058916.mESCs_mouse_embryonic_stem_cells.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "mESCs (mouse embryonic stem cells)" }, "biological_condition": "Genotype: wildtype;" } ], "references": [ { "identifier": "GEO:GSE114599" }, { "identifier": "GEO:GSM3145756" }, { "identifier": "GEO:GSM3145755" }, { "identifier": "GTRD:EXP058916" } ], "species": { "name": "Mus musculus" }, "datasets": [ { "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/EXP058916.mESCs_mouse_embryonic_stem_cells.CTCF/EXP058916.mESCs_mouse_embryonic_stem_cells.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/EXP058916.mESCs_mouse_embryonic_stem_cells.CTCF/EXP058916.mESCs_mouse_embryonic_stem_cells.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] } ] }, { "folder": "GSE20650.hESC-1_Embryonic_stem_cells.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSE20650" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/GSE20650.hESC-1_Embryonic_stem_cells.CTCF/GSE20650.hESC-1_Embryonic_stem_cells.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/GSE20650.hESC-1_Embryonic_stem_cells.CTCF/GSE20650.hESC-1_Embryonic_stem_cells.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] } ] }, { "folder": "GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.CTCF", "tf_name": "CTCF", "samples": [ { "cell": { "title": "hESC-1 (Embryonic stem cells)" }, "biological_condition": "NAIVE" } ], "references": [ { "identifier": "GEO:GSE69646" } ], "species": { "name": "Homo sapiens" }, "datasets": [ { "jaspar_id": "MA0139.1", "bed_filename": "macs/DAMO/GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.CTCF/GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.CTCF.MA0139.1.damo.bed", "fasta_filename": "macs/DAMO/GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.CTCF/GSE69646.hESC-1_Embryonic_stem_cells_NAIVE.CTCF.MA0139.1.damo.fa", "profile_name": "CTCF", "synonyms": [ "11 zinc finger transcriptional repressor", "11-zinc finger protein", "CCCTC-binding factor", "CCCTC-binding factor (zinc finger protein)", "CFAP108", "CTCFL paralog", "FAP108", "MRD21", "transcriptional repressor CTCF" ] } ] } ] }