Datasets List
This API provides an easy-to-use REST web interface to query/retrieve data
from the UniBind database. The API comes with a human browsable interface and
also a programmatic interface which return the results in different formats,
including
json, jsonp, yaml,
bed, and also api for a browsable interface.
GET /api/v1/datasets/?collection=Robust&format=api&q=&species=3702&summary=true
{ "count": 78, "next": "https://unibind.uio.no/api/v1/datasets/?collection=Robust&format=api&page=2&q=&species=3702&summary=true", "previous": null, "results": [ { "folder": "EXP041453.3_day_old_seedlings.ABF1", "tf_name": "ABF1", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "EtOH mock treatment, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130866" }, { "identifier": "GEO:GSM2130868" }, { "identifier": "GEO:GSE80564" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130870" }, { "identifier": "GTRD:EXP041453" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0570.2", "bed_filename": "macs/DAMO/EXP041453.3_day_old_seedlings.ABF1/EXP041453.3_day_old_seedlings.ABF1.MA0570.2.damo.bed", "fasta_filename": "macs/DAMO/EXP041453.3_day_old_seedlings.ABF1/EXP041453.3_day_old_seedlings.ABF1.MA0570.2.damo.fa", "profile_name": "ABF1", "synonyms": [ "AT1G49720", "AtABF1", "F14J22.7", "F14J22_7", "abscisic acid responsive element-binding factor 1" ] } ] }, { "folder": "EXP041454.3_day_old_seedlings.ABF1", "tf_name": "ABF1", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "10 uM abscisic acid, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSE80564" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130867" }, { "identifier": "GEO:GSM2130865" }, { "identifier": "GEO:GSM2130869" }, { "identifier": "GTRD:EXP041454" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0570.2", "bed_filename": "macs/DAMO/EXP041454.3_day_old_seedlings.ABF1/EXP041454.3_day_old_seedlings.ABF1.MA0570.2.damo.bed", "fasta_filename": "macs/DAMO/EXP041454.3_day_old_seedlings.ABF1/EXP041454.3_day_old_seedlings.ABF1.MA0570.2.damo.fa", "profile_name": "ABF1", "synonyms": [ "AT1G49720", "AtABF1", "F14J22.7", "F14J22_7", "abscisic acid responsive element-binding factor 1" ] } ] }, { "folder": "EXP041415.3_day_old_seedlings.ABF3", "tf_name": "ABF3", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "EtOH mock treatment, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130978" }, { "identifier": "GEO:GSM2130980" }, { "identifier": "GEO:GSE80564" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130976" }, { "identifier": "GTRD:EXP041415" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0930.1", "bed_filename": "macs/DAMO/EXP041415.3_day_old_seedlings.ABF3/EXP041415.3_day_old_seedlings.ABF3.MA0930.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041415.3_day_old_seedlings.ABF3/EXP041415.3_day_old_seedlings.ABF3.MA0930.1.damo.fa", "profile_name": "ABF3", "synonyms": [ "AT4G34000", "AtABF3", "DC3 PROMOTER-BINDING FACTOR 5", "DPBF5", "F17I5.200", "abscisic acid responsive elements-binding factor 3" ] } ] }, { "folder": "EXP041416.3_day_old_seedlings.ABF3", "tf_name": "ABF3", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "10 uM abscisic acid, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130979" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130977" }, { "identifier": "GEO:GSM2130975" }, { "identifier": "GEO:GSE80564" }, { "identifier": "GTRD:EXP041416" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0930.1", "bed_filename": "macs/DAMO/EXP041416.3_day_old_seedlings.ABF3/EXP041416.3_day_old_seedlings.ABF3.MA0930.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041416.3_day_old_seedlings.ABF3/EXP041416.3_day_old_seedlings.ABF3.MA0930.1.damo.fa", "profile_name": "ABF3", "synonyms": [ "AT4G34000", "AtABF3", "DC3 PROMOTER-BINDING FACTOR 5", "DPBF5", "F17I5.200", "abscisic acid responsive elements-binding factor 3" ] } ] }, { "folder": "EXP041417.3_day_old_seedlings.ABF4", "tf_name": "ABF4", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "EtOH mock treatment, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130974" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSE80564" }, { "identifier": "GEO:GSM2130972" }, { "identifier": "GEO:GSM2130970" }, { "identifier": "GTRD:EXP041417" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA1659.1", "bed_filename": "macs/DAMO/EXP041417.3_day_old_seedlings.ABF4/EXP041417.3_day_old_seedlings.ABF4.MA1659.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041417.3_day_old_seedlings.ABF4/EXP041417.3_day_old_seedlings.ABF4.MA1659.1.damo.fa", "profile_name": "ABF4", "synonyms": [ "ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2", "ABRE binding factor 4", "AREB2", "AT3G19290", "AtAREB2", "MVI11.7" ] } ] }, { "folder": "EXP041418.3_day_old_seedlings.ABF4", "tf_name": "ABF4", "samples": [ { "cell": { "title": "3 day old seedlings" }, "biological_condition": "10 uM abscisic acid, 4 hours; dark" } ], "references": [ { "identifier": "GEO:GSM2130973" }, { "identifier": "PUBMED:27811239" }, { "identifier": "GEO:GSM2130971" }, { "identifier": "GEO:GSE80564" }, { "identifier": "GEO:GSM2130969" }, { "identifier": "GTRD:EXP041418" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA1659.1", "bed_filename": "macs/DAMO/EXP041418.3_day_old_seedlings.ABF4/EXP041418.3_day_old_seedlings.ABF4.MA1659.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041418.3_day_old_seedlings.ABF4/EXP041418.3_day_old_seedlings.ABF4.MA1659.1.damo.fa", "profile_name": "ABF4", "synonyms": [ "ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2", "ABRE binding factor 4", "AREB2", "AT3G19290", "AtAREB2", "MVI11.7" ] } ] }, { "folder": "EXP041276.inflorescence.AG", "tf_name": "AG", "samples": [ { "cell": { "title": "inflorescence" }, "biological_condition": "AG-GFP AP1-GR ap1 cal; 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers)" } ], "references": [ { "identifier": "PUBMED:23821642" }, { "identifier": "GEO:GSE45938" }, { "identifier": "GEO:GSM1120015" }, { "identifier": "GEO:GSM1120014" }, { "identifier": "GTRD:EXP041276" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0005.2", "bed_filename": "macs/DAMO/EXP041276.inflorescence.AG/EXP041276.inflorescence.AG.MA0005.2.damo.bed", "fasta_filename": "macs/DAMO/EXP041276.inflorescence.AG/EXP041276.inflorescence.AG.MA0005.2.damo.fa", "profile_name": "AG", "synonyms": [ "AGAMOUS", "AGAMOUS PROTEIN", "AT4G18960", "F13C5.130", "F13C5_130", "K-box region and MADS-box transcription factor family protein" ] } ] }, { "folder": "EXP041292.seedling.AGL27", "tf_name": "AGL27", "samples": [ { "cell": { "title": "seedling" }, "biological_condition": "iFLM-beta splicing variant" } ], "references": [ { "identifier": "GEO:GSE48082" }, { "identifier": "GEO:GSM1167541" }, { "identifier": "PUBMED:24067612" }, { "identifier": "GEO:GSM1167547" }, { "identifier": "GTRD:EXP041292" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA1012.1", "bed_filename": "macs/DAMO/EXP041292.seedling.AGL27/EXP041292.seedling.AGL27.MA1012.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041292.seedling.AGL27/EXP041292.seedling.AGL27.MA1012.1.damo.fa", "profile_name": "AGL27", "synonyms": [ "AGAMOUS-like 27", "AGL27", "AT1G77080", "FLM", "FLOWERING LOCUS M", "K-box region and MADS-box transcription factor family protein", "MADS AFFECTING FLOWERING 1" ] } ] }, { "folder": "EXP041291.seedling.AGL27", "tf_name": "AGL27", "samples": [ { "cell": { "title": "seedling" }, "biological_condition": "" } ], "references": [ { "identifier": "GEO:GSM1167549" }, { "identifier": "PUBMED:24067612" }, { "identifier": "GEO:GSM1167552" }, { "identifier": "GEO:GSM1167551" }, { "identifier": "GEO:GSE48082" }, { "identifier": "GTRD:EXP041291" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA1012.1", "bed_filename": "macs/DAMO/EXP041291.seedling.AGL27/EXP041291.seedling.AGL27.MA1012.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041291.seedling.AGL27/EXP041291.seedling.AGL27.MA1012.1.damo.fa", "profile_name": "AGL27", "synonyms": [ "AGAMOUS-like 27", "AGL27", "AT1G77080", "FLM", "FLOWERING LOCUS M", "K-box region and MADS-box transcription factor family protein", "MADS AFFECTING FLOWERING 1" ] } ] }, { "folder": "EXP041210.apical_meristems.AP1", "tf_name": "AP1", "samples": [ { "cell": { "title": "apical meristems" }, "biological_condition": "single treatment of 1 uM DEX to the shoot apex (2 hours)" } ], "references": [ { "identifier": "GEO:GSE20176" }, { "identifier": "PUBMED:20360106" }, { "identifier": "GEO:GSM506208" }, { "identifier": "GTRD:EXP041210" } ], "species": { "name": "Arabidopsis thaliana" }, "datasets": [ { "jaspar_id": "MA0940.1", "bed_filename": "macs/DAMO/EXP041210.apical_meristems.AP1/EXP041210.apical_meristems.AP1.MA0940.1.damo.bed", "fasta_filename": "macs/DAMO/EXP041210.apical_meristems.AP1/EXP041210.apical_meristems.AP1.MA0940.1.damo.fa", "profile_name": "AP1", "synonyms": [ "AGAMOUS-like 7", "AGL7", "APETALA1", "AT1G69120", "AtAP1", "F4N2.9", "F4N2_9", "FLORAL HOMEOTIC PROTEIN APETALA1", "K-box region and MADS-box transcription factor family protein" ] } ] } ] }